Restriction Fragments for YBRWdelta17



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BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

YBRWdelta17 on chromosome II from coordinates 350459 to 350751.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.28456.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 8 12 + TspDTI ATGAA 23 21 . . 11 16 + ApoI RAATTY 11 15 . . 12 15 + TspEI AATT 11 15 . . 24 29 + SspI AATATT 26 26 . . 38 42 - TspDTI ATGAA 28 26 . . 46 51 + SpeI ACTAGT 46 50 . . 47 50 + MaeI CTAG 47 49 . . 65 68 + SetI ASST 68 64 . . 99 104 + Hpy166II GTNNAC 101 101 . . 99 104 + HindII GTYRAC 101 101 . . 103 107 + TspGWI ACGGA 118 116 . . 105 109 + FokI GGATG 118 122 . . 105 109 + BseGI GGATG 111 109 . . 117 120 + SetI ASST 120 116 . . 117 120 + CviJI RGCY 118 118 . . 117 120 + AluI AGCT 118 118 . . 121 125 + FokI GGATG 134 138 . . 121 125 + BseGI GGATG 127 125 . . 138 142 + TspDTI ATGAA 153 151 . . 166 169 + TaqI TCGA 166 168 . . 188 193 + EcoRI GAATTC 188 192 . . 188 193 + ApoI RAATTY 188 192 . . 189 192 + TspEI AATT 188 192 . . 192 196 - MboII GAAGA 184 183 . . 196 199 + FnuDII* CGCG 197 197 . . 206 209 + TspEI AATT 205 209 . . 210 213 + MaeI CTAG 210 212 . . 230 235 + SspI AATATT 232 232 . . 254 259 + TatI WGTACW 254 258 . . 255 258 + Csp6I GTAC 255 257 . . 255 258 + RsaI GTAC 256 256 . . 260 265 + MmeI TCCRAC 285 283 . . 266 269 + TspEI AATT 265 269 . . 276 281 + ApoI RAATTY 276 280 . . 277 280 + TspEI AATT 276 280 . . 279 283 - TspDTI ATGAA 269 267 . . #--------------------------------------- # # # AluI: # [AGCT] # 118 175 # # ApoI: # [RAATTY] # 11 17 88 177 # # BseGI: # [GGATG] # 16 111 166 # # Csp6I: # [GTAC] # 38 255 # # CviJI: # [RGCY] # 118 175 # # EcoRI: # [GAATTC] # 105 188 # # FnuDII*: # [CGCG] # 96 197 # # FokI: # [GGATG] # 16 118 159 # # HindII: # [GTYRAC] # 101 192 # # Hpy166II: # [GTNNAC] # 101 192 # # MaeI: # [CTAG] # 47 83 163 # # MboII: # [GAAGA] # 109 184 # # MmeI: # [TCCRAC] # 8 285 # # RsaI: # [GTAC] # 37 256 # # SetI: # [ASST] # 52 68 173 # # SpeI: # [ACTAGT] # 46 247 # # SspI: # [AATATT] # 26 61 206 # # TaqI: # [TCGA] # 127 166 # # TatI: # [WGTACW] # 39 254 # # TspDTI: # [ATGAA] # 5 23 24 116 125 # # TspEI: # [AATT] # 11 11 17 17 60 177 # # TspGWI: # [ACGGA] # 118 175 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 293 # Reported_sequences: 1 # Reported_hitcount: 36 #---------------------------------------