Restriction Fragments for TEL13R



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BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

TEL13R on chromosome XIII from coordinates 923541 to 924431.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.23167.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 32 35 + TspEI AATT 31 35 . . 48 51 + SetI ASST 51 47 . . 49 53 + HphI GGTGA 61 60 . . 64 69 + ApoI RAATTY 64 68 . . 65 68 + TspEI AATT 64 68 . . 75 80 + SspI AATATT 77 77 . . 79 82 + MseI TTAA 79 81 . . 103 108 - TsoI TARCCA 93 91 . . 134 139 + NspI RCATGY 138 134 . . 135 138 + FatI CATG 134 138 . . 135 138 + NlaIII CATG 138 134 . . 135 138 + CviAII CATG 135 137 . . 141 144 + MseI TTAA 141 143 . . 157 162 + SspI AATATT 159 159 . . 164 169 + NlaIV GGNNCC 166 166 . . 165 169 + BmgT120I GGNCC 166 167 . . 165 169 + AsuI* GGNCC 165 168 . . 166 169 + CviJI RGCY 167 167 . . 166 169 + HaeIII GGCC 167 167 . . 167 171 + TauI GCSGC 170 167 . . 167 171 + BlsI GCNGC 169 168 . . 167 171 + BisI GCNGC 168 169 . . 168 173 + NspBII* CMGCKG 170 170 . . 168 171 + AciI CCGC 168 170 . . 189 192 + MseI TTAA 189 191 . . 205 208 + FatI CATG 204 208 . . 205 208 + NlaIII CATG 208 204 . . 205 208 + CviAII CATG 205 207 . . 209 212 + CviJI RGCY 210 210 . . 241 247 + TspRI CASTGNN 247 238 . . 243 247 + DdeI CTNAG 243 246 . . 243 247 - BspCNI CTCAG 235 233 . . 243 247 - BseMII CTCAG 234 232 . . 245 248 - MnlI CCTC 238 237 . . 258 261 + CviRI* TGCA 259 259 . . 254 258 - BceAI ACGGC 239 241 . . 274 277 + CviRI* TGCA 275 275 . . 275 279 + SfaNI GCATC 284 288 . . 279 282 + MaeI CTAG 279 281 . . 281 286 + TatI WGTACW 281 285 . . 281 286 + ScaI AGTACT 283 283 . . 282 285 + Csp6I GTAC 282 284 . . 282 285 + RsaI GTAC 283 283 . . 302 306 + BmgT120I GGNCC 303 304 . . 302 306 + AsuI* GGNCC 302 305 . . 303 306 + CviJI RGCY 304 304 . . 303 306 + HaeIII GGCC 304 304 . . 299 303 - BccI CCATC 293 294 . . 305 310 + DsaI* CCRYGG 305 309 . . 305 310 + SecI* CCNNGG 305 309 . . 305 315 + BsiYI* CCNNNNNNNGG 311 308 . . 304 308 - BceAI ACGGC 289 291 . . 357 361 + SfaNI GCATC 366 370 . . 357 368 + AlfI GCANNNNNNTGC 346 344 380 378 358 367 + MslI CAYNNNNRTG 362 362 . . 358 362 - FokI GGATG 344 348 . . 358 362 - BseGI GGATG 357 355 . . 360 364 - TspGWI ACGGA 350 348 . . 357 368 - AlfI GCANNNNNNTGC 380 378 346 344 382 387 + Hpy166II GTNNAC 384 384 . . 382 387 + BssNAI GTATAC 384 384 . . 382 387 + AccI GTMKAC 383 385 . . 394 397 + SetI ASST 397 393 . . 395 399 + HphI GGTGA 407 406 . . 392 396 - Hin4II* CCTTC 386 385 . . 462 465 + DpnI GATC 463 463 . . 462 465 + BstKTI GATC 464 462 . . 462 465 + MboI GATC 461 465 . . 470 475 + Hpy166II GTNNAC 472 472 . . 470 475 + HpaI GTTAAC 472 472 . . 470 475 + HindII GTYRAC 472 472 . . 471 474 + MseI TTAA 471 473 . . 473 478 + AclI AACGTT 474 476 . . 474 477 + TaiI ACGT 477 473 . . 474 477 + SetI ASST 477 473 . . 474 477 + MaeII ACGT 474 476 . . 489 492 + SetI ASST 492 488 . . 494 498 + MboII GAAGA 506 505 . . 499 503 + Tsp4CI* ACNGT 501 500 . . 506 510 + HphI GGTGA 518 517 . . 517 521 - BccI CCATC 511 512 . . 523 527 + FokI GGATG 536 540 . . 523 527 + BseGI GGATG 529 527 . . 524 528 - BccI CCATC 518 519 . . 531 534 - MnlI CCTC 524 523 . . 559 564 - MmeI TCCRAC 540 538 . . 572 575 + TspEI AATT 571 575 . . 577 580 - MnlI CCTC 570 569 . . 581 585 + MaeIII GTNAC 580 585 . . 584 588 + Tsp4CI* ACNGT 586 585 . . 593 598 + Hpy166II GTNNAC 595 595 . . 593 598 + SduI GDGCHC 597 593 . . 593 598 + BseSI GKGCMC 597 593 . . 593 598 + ApaLI GTGCAC 593 597 . . 593 598 + HgiAI* GWGCWC 597 593 . . 594 597 + CviRI* TGCA 595 595 . . 599 603 - BccI CCATC 593 594 . . 628 632 + FokI GGATG 641 645 . . 628 632 + BseGI GGATG 634 632 . . 625 629 - BccI CCATC 619 620 . . 629 633 - BccI CCATC 623 624 . . 636 641 - MmeI TCCRAC 617 615 . . 642 645 - AciI CCGC 642 644 . . 640 645 - BsrBI CCGCTC 642 642 . . 653 657 - Hin4II* CCTTC 647 646 . . 657 661 + BslFI GGGAC 671 675 . . 665 669 + MaeIII GTNAC 664 669 . . 678 681 + SetI ASST 681 677 . . 677 680 - MnlI CCTC 670 669 . . 676 686 - BsaXI ACNNNNNCTCC 698 695 668 665 691 694 - MnlI CCTC 684 683 . . 700 703 + MseI TTAA 700 702 . . 690 700 - BsaXI ACNNNNNCTCC 712 709 682 679 707 712 + NspI RCATGY 711 707 . . 708 711 + FatI CATG 707 711 . . 708 711 + NlaIII CATG 711 707 . . 708 711 + CviAII CATG 708 710 . . 704 708 - BsmAI GTCTC 698 702 . . 769 774 - TaqII CACCCA 759 757 . . 788 793 - TaqII CACCCA 778 776 . . 799 804 - TaqII CACCCA 789 787 . . 805 810 - TaqII CACCCA 795 793 . . 818 823 - TaqII CACCCA 808 806 . . 831 836 - TaqII CACCCA 821 819 . . 841 846 - TaqII CACCCA 831 829 . . 859 864 - TaqII CACCCA 849 847 . . 870 875 - TaqII CACCCA 860 858 . . #--------------------------------------- # # # AccI: # [GTMKAC] # 383 508 # # AciI: # [CCGC] # 168 249 474 # # AclI: # [AACGTT] # 417 474 # # AlfI: # [GCANNNNNNTGC] # 0 0 34 346 511 # # ApaLI: # [GTGCAC] # 298 593 # # ApoI: # [RAATTY] # 64 827 # # AsuI*: # [GGNCC] # 137 165 589 # # BccI: # [CCATC] # 4 7 26 75 218 268 # 293 # # BceAI: # [ACGGC] # 50 239 602 # # BisI: # [GCNGC] # 168 723 # # BlsI: # [GCNGC] # 169 722 # # BmgT120I: # [GGNCC] # 137 166 588 # # BsaXI: # [ACNNNNNCTCC] # 14 14 16 179 668 # # BseGI: # [GGATG] # 105 172 257 357 # # BseMII: # [CTCAG] # 234 657 # # BseSI: # [GKGCMC] # 294 597 # # BsiYI*: # [CCNNNNNNNGG] # 311 580 # # BslFI: # [GGGAC] # 220 671 # # BsmAI: # [GTCTC] # 193 698 # # BspCNI: # [CTCAG] # 235 656 # # BsrBI: # [CCGCTC] # 249 642 # # BssNAI: # [GTATAC] # 384 507 # # BstKTI: # [GATC] # 427 464 # # Csp6I: # [GTAC] # 282 609 # # CviAII: # [CATG] # 70 135 183 503 # # CviJI: # [RGCY] # 43 94 167 587 # # CviRI*: # [TGCA] # 16 259 296 320 # # DdeI: # [CTNAG] # 243 648 # # DpnI: # [GATC] # 428 463 # # DsaI*: # [CCRYGG] # 305 586 # # FatI: # [CATG] # 70 134 184 503 # # FokI: # [GGATG] # 105 192 250 344 # # HaeIII: # [GGCC] # 137 167 587 # # HgiAI*: # [GWGCWC] # 294 597 # # Hin4II*: # [CCTTC] # 244 261 386 # # HindII: # [GTYRAC] # 419 472 # # HpaI: # [GTTAAC] # 419 472 # # HphI: # [GGTGA] # 61 111 346 373 # # Hpy166II: # [GTNNAC] # 88 123 296 384 # # MaeI: # [CTAG] # 279 612 # # MaeII: # [ACGT] # 417 474 # # MaeIII: # [GTNAC] # 84 227 580 # # MboI: # [GATC] # 430 461 # # MboII: # [GAAGA] # 385 506 # # MmeI: # [TCCRAC] # 77 274 540 # # MnlI: # [CCTC] # 14 46 100 207 238 286 # # MseI: # [TTAA] # 48 62 79 191 229 282 # # MslI: # [CAYNNNNRTG] # 362 529 # # NlaIII: # [CATG] # 70 138 180 503 # # NlaIV: # [GGNNCC] # 166 725 # # NspBII*: # [CMGCKG] # 170 721 # # NspI: # [RCATGY] # 138 180 573 # # RsaI: # [GTAC] # 283 608 # # ScaI: # [AGTACT] # 283 608 # # SduI: # [GDGCHC] # 294 597 # # SecI*: # [CCNNGG] # 305 586 # # SetI: # [ASST] # 15 51 80 189 210 346 # # SfaNI: # [GCATC] # 82 284 525 # # SspI: # [AATATT] # 77 82 732 # # TaiI: # [ACGT] # 414 477 # # TaqII: # [CACCCA] # 6 10 11 11 13 13 # 18 19 31 759 # # TatI: # [WGTACW] # 281 610 # # TauI: # [GCSGC] # 170 721 # # TsoI: # [TARCCA] # 93 798 # # Tsp4CI*: # [ACNGT] # 85 305 501 # # TspEI: # [AATT] # 31 33 320 507 # # TspGWI: # [ACGGA] # 350 541 # # TspRI: # [CASTGNN] # 247 644 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 891 # Reported_sequences: 1 # Reported_hitcount: 127 #---------------------------------------