Restriction Fragments for OLI1/Q0130



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BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

OLI1/Q0130 on mitochondria from coordinates 46723 to 46953.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.6149.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 2 5 + CviRI* TGCA 3 3 . . 5 8 + TspEI AATT 4 8 . . 16 20 + BlsI GCNGC 18 17 . . 16 20 + BisI GCNGC 17 18 . . 16 20 + BbvI GCAGC 28 32 . . 16 20 + TseI GCWGC 16 19 . . 18 21 + SetI ASST 21 17 . . 18 21 + CviJI RGCY 19 19 . . 18 21 + AluI AGCT 19 19 . . 36 39 + SetI ASST 39 35 . . 34 39 - BspMI ACCTGC 25 29 . . 32 42 - Hin4I GAYNNNNNVTC 55 50 23 18 47 52 + MfeI CAATTG 47 51 . . 48 51 + TspEI AATT 47 51 . . 66 69 + SetI ASST 69 65 . . 64 69 - BspMI ACCTGC 55 59 . . 91 95 + BlsI GCNGC 93 92 . . 91 95 + BisI GCNGC 92 93 . . 91 95 + BbvI GCAGC 103 107 . . 91 95 + TseI GCWGC 91 94 . . 93 96 + SetI ASST 96 92 . . 93 96 + CviJI RGCY 94 94 . . 93 96 + AluI AGCT 94 94 . . 97 104 + PacI TTAATTAA 101 99 . . 97 100 + MseI TTAA 97 99 . . 99 102 + TspEI AATT 98 102 . . 100 105 + VspI ATTAAT 101 103 . . 101 104 + MseI TTAA 101 103 . . 112 117 + Hpy178III* TCNNGA 113 115 . . 121 125 + BccI CCATC 129 130 . . 126 129 + TspEI AATT 125 129 . . 128 131 + MseI TTAA 128 130 . . 134 137 + SetI ASST 137 133 . . 136 139 + MaeI CTAG 136 138 . . 150 153 + CviJI RGCY 151 151 . . 149 154 - TsoI TARCCA 139 137 . . 159 162 + SetI ASST 162 158 . . 172 176 + Hpy188I TCNGA 174 173 . . 177 180 + SetI ASST 180 176 . . 177 180 + CviJI RGCY 178 178 . . 177 180 + AluI AGCT 178 178 . . 179 184 + SfeI* CTRYAG 179 183 . . 183 186 + SetI ASST 186 182 . . 196 199 + MseI TTAA 196 198 . . 204 208 - TspDTI ATGAA 194 192 . . #--------------------------------------- # # # AluI: # [AGCT] # 19 53 75 84 # # BbvI: # [GCAGC] # 28 75 128 # # BccI: # [CCATC] # 102 129 # # BisI: # [GCNGC] # 17 75 139 # # BlsI: # [GCNGC] # 18 75 138 # # BspMI: # [ACCTGC] # 25 30 176 # # CviJI: # [RGCY] # 19 27 53 57 75 # # CviRI*: # [TGCA] # 3 228 # # Hin4I: # [GAYNNNNNVTC] # 23 32 176 # # Hpy178III*: # [TCNNGA] # 113 118 # # Hpy188I: # [TCNGA] # 57 174 # # MaeI: # [CTAG] # 95 136 # # MfeI: # [CAATTG] # 47 184 # # MseI: # [TTAA] # 4 27 35 68 97 # # PacI: # [TTAATTAA] # 101 130 # # SetI: # [ASST] # 6 18 18 21 25 27 # 30 41 45 # # SfeI*: # [CTRYAG] # 52 179 # # TseI: # [GCWGC] # 16 75 140 # # TsoI: # [TARCCA] # 92 139 # # TspDTI: # [ATGAA] # 37 194 # # TspEI: # [AATT] # 4 27 43 51 106 # # VspI: # [ATTAAT] # 101 130 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 231 # Reported_sequences: 1 # Reported_hitcount: 45 #---------------------------------------