Restriction Fragments for ARS1416



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BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

ARS1416 on chromosome XIV from coordinates 325054 to 325267.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.4303.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 7 10 + CviRI* TGCA 8 8 . . 30 34 + MaeIII GTNAC 29 34 . . 50 53 + AciI CCGC 50 52 . . 53 57 + DdeI CTNAG 53 56 . . 67 72 + SspI AATATT 69 69 . . 81 86 + SspI AATATT 83 83 . . 90 95 + Hpy166II GTNNAC 92 92 . . 90 93 + Csp6I GTAC 90 92 . . 90 93 + RsaI GTAC 91 91 . . 97 102 + VspI ATTAAT 98 100 . . 98 101 + MseI TTAA 98 100 . . 100 103 + TspEI AATT 99 103 . . 116 119 + MseI TTAA 116 118 . . 122 125 + TaiI ACGT 125 121 . . 122 125 + SetI ASST 125 121 . . 122 125 + MaeII ACGT 122 124 . . 133 137 + Tsp45I GTSAC 132 137 . . 133 137 + MaeIII GTNAC 132 137 . . 135 146 + TstI CACNNNNNNTCC 126 121 158 153 145 148 + MnlI CCTC 155 154 . . 148 159 + TstI CACNNNNNNTCC 139 134 171 166 158 161 + MnlI CCTC 168 167 . . 194 199 + SfeI* CTRYAG 194 198 . . 196 200 + Tsp4CI* ACNGT 198 197 . . 207 212 + Hpy166II GTNNAC 209 209 . . 207 212 + HindII GTYRAC 209 209 . . #--------------------------------------- # # # AciI: # [CCGC] # 50 164 # # Csp6I: # [GTAC] # 90 124 # # CviRI*: # [TGCA] # 8 206 # # DdeI: # [CTNAG] # 53 161 # # HindII: # [GTYRAC] # 5 209 # # Hpy166II: # [GTNNAC] # 5 92 117 # # MaeII: # [ACGT] # 92 122 # # MaeIII: # [GTNAC] # 29 82 103 # # MnlI: # [CCTC] # 13 46 155 # # MseI: # [TTAA] # 18 98 98 # # RsaI: # [GTAC] # 91 123 # # SetI: # [ASST] # 89 125 # # SfeI*: # [CTRYAG] # 20 194 # # SspI: # [AATATT] # 14 69 131 # # TaiI: # [ACGT] # 89 125 # # Tsp45I: # [GTSAC] # 82 132 # # Tsp4CI*: # [ACNGT] # 16 198 # # TspEI: # [AATT] # 99 115 # # TstI: # [CACNNNNNNTCC] # 13 13 19 43 126 # # VspI: # [ATTAAT] # 98 116 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 214 # Reported_sequences: 1 # Reported_hitcount: 26 #---------------------------------------