Restriction Fragments for ARS1406



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BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

ARS1406 on chromosome XIV from coordinates 61599 to 61895.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.1371.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 18 21 + Csp6I GTAC 18 20 . . 18 21 + RsaI GTAC 19 19 . . 29 33 + HgaI GACGC 38 43 . . 49 52 + TspEI AATT 48 52 . . 66 69 + TspEI AATT 65 69 . . 86 90 - MboII GAAGA 78 77 . . 101 104 + MseI TTAA 101 103 . . 114 117 - MnlI CCTC 107 106 . . 123 126 + MseI TTAA 123 125 . . 143 147 + Hpy188I TCNGA 145 144 . . 146 149 + DpnI GATC 147 147 . . 146 149 + BstKTI GATC 148 146 . . 146 155 + BsaBI GATNNNNATC 150 150 . . 146 149 + MboI GATC 145 149 . . 155 160 + DsaI* CCRYGG 155 159 . . 155 160 + StyI CCWWGG 155 159 . . 155 160 + NcoI CCATGG 155 159 . . 155 160 + SecI* CCNNGG 155 159 . . 156 159 + FatI CATG 155 159 . . 156 159 + NlaIII CATG 159 155 . . 156 159 + CviAII CATG 156 158 . . 177 180 + MseI TTAA 177 179 . . 209 212 + CviJI RGCY 210 210 . . 225 229 + TspDTI ATGAA 240 238 . . 230 235 + TatI WGTACW 230 234 . . 230 235 + Bsp1407I TGTACA 230 234 . . 231 234 + Csp6I GTAC 231 233 . . 231 234 + RsaI GTAC 232 232 . . 248 253 + ApoI RAATTY 248 252 . . 249 252 + TspEI AATT 248 252 . . 250 257 + SwaI ATTTAAAT 253 253 . . 251 256 + AhaIII* TTTAAA 253 253 . . 252 255 + MseI TTAA 252 254 . . 263 266 + TspEI AATT 262 266 . . 268 273 + AhaIII* TTTAAA 270 270 . . 269 272 + MseI TTAA 269 271 . . 277 280 + TspEI AATT 276 280 . . 290 293 + MseI TTAA 290 292 . . #--------------------------------------- # # # AhaIII*: # [TTTAAA] # 17 27 253 # # ApoI: # [RAATTY] # 49 248 # # BsaBI: # [GATNNNNATC] # 147 150 # # Bsp1407I: # [TGTACA] # 67 230 # # BstKTI: # [GATC] # 148 149 # # Csp6I: # [GTAC] # 18 66 213 # # CviAII: # [CATG] # 141 156 # # CviJI: # [RGCY] # 87 210 # # DpnI: # [GATC] # 147 150 # # DsaI*: # [CCRYGG] # 142 155 # # FatI: # [CATG] # 142 155 # # HgaI: # [GACGC] # 38 259 # # Hpy188I: # [TCNGA] # 145 152 # # MboI: # [GATC] # 145 152 # # MboII: # [GAAGA] # 78 219 # # MnlI: # [CCTC] # 107 190 # # MseI: # [TTAA] # 7 17 21 22 54 75 # 101 # # NcoI: # [CCATGG] # 142 155 # # NlaIII: # [CATG] # 138 159 # # RsaI: # [GTAC] # 19 65 213 # # SecI*: # [CCNNGG] # 142 155 # # StyI: # [CCWWGG] # 142 155 # # SwaI: # [ATTTAAAT] # 44 253 # # TatI: # [WGTACW] # 67 230 # # TspDTI: # [ATGAA] # 57 240 # # TspEI: # [AATT] # 14 14 17 21 48 183 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 297 # Reported_sequences: 1 # Reported_hitcount: 38 #---------------------------------------