Restriction Fragments for ARS1010



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BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

ARS1010 on chromosome X from coordinates 298981 to 299245.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.11106.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 3 6 + TaqI TCGA 3 5 . . 6 9 + TspEI AATT 5 9 . . 14 19 + HindIII AAGCTT 14 18 . . 15 18 + SetI ASST 18 14 . . 15 18 + CviJI RGCY 16 16 . . 15 18 + AluI AGCT 16 16 . . 21 25 + MaeIII GTNAC 20 25 . . 19 24 - TsoI TARCCA 9 7 . . 31 34 + MseI TTAA 31 33 . . 47 51 + MaeIII GTNAC 46 51 . . 50 54 + Tsp4CI* ACNGT 52 51 . . 61 64 + MseI TTAA 61 63 . . 69 74 + ApoI RAATTY 69 73 . . 70 73 + TspEI AATT 69 73 . . 75 80 + AhaIII* TTTAAA 77 77 . . 76 79 + MseI TTAA 76 78 . . 79 84 + ApoI RAATTY 79 83 . . 80 83 + TspEI AATT 79 83 . . 93 97 - BsmAI GTCTC 87 91 . . 107 110 + TspEI AATT 106 110 . . 121 124 + SetI ASST 124 120 . . 121 124 + CviJI RGCY 122 122 . . 121 124 + AluI AGCT 122 122 . . 176 180 + DdeI CTNAG 176 179 . . 182 187 - Eco57MI CTGRAG 167 165 . . 182 187 - Eco57I CTGAAG 167 165 . . 188 199 + BcgI CGANNNNNNTGC 177 175 211 209 189 194 + ApoI RAATTY 189 193 . . 190 193 + TspEI AATT 189 193 . . 201 204 + SetI ASST 204 200 . . 202 205 + MnlI CCTC 212 211 . . 208 212 + TspDTI ATGAA 223 221 . . 210 214 + TfiI GAWTC 210 213 . . 210 214 + HinfI GANTC 210 213 . . 213 217 + Hpy188I TCNGA 215 214 . . 223 227 - MboII GAAGA 215 214 . . 235 238 + SetI ASST 238 234 . . 236 239 + MnlI CCTC 246 245 . . 239 250 + CspCI CAANNNNNGTGG 227 225 262 260 244 248 + Tsp4CI* ACNGT 246 245 . . 245 250 + DsaI* CCRYGG 245 249 . . 245 250 + SecI* CCNNGG 245 249 . . #--------------------------------------- # # # AhaIII*: # [TTTAAA] # 77 188 # # AluI: # [AGCT] # 16 106 143 # # ApoI: # [RAATTY] # 10 69 76 110 # # BcgI: # [CGANNNNNNTGC] # 34 54 177 # # BsmAI: # [GTCTC] # 87 178 # # CspCI: # [CAANNNNNGTGG] # 3 35 227 # # CviJI: # [RGCY] # 16 106 143 # # DdeI: # [CTNAG] # 89 176 # # DsaI*: # [CCRYGG] # 20 245 # # Eco57I: # [CTGAAG] # 98 167 # # Eco57MI: # [CTGRAG] # 98 167 # # HindIII: # [AAGCTT] # 14 251 # # HinfI: # [GANTC] # 55 210 # # Hpy188I: # [TCNGA] # 50 215 # # MaeIII: # [GTNAC] # 20 26 219 # # MboII: # [GAAGA] # 50 215 # # MnlI: # [CCTC] # 19 34 212 # # MseI: # [TTAA] # 15 30 31 189 # # SecI*: # [CCNNGG] # 20 245 # # SetI: # [ASST] # 18 27 34 80 106 # # TaqI: # [TCGA] # 3 262 # # TfiI: # [GAWTC] # 55 210 # # TsoI: # [TARCCA] # 9 256 # # Tsp4CI*: # [ACNGT] # 19 52 194 # # TspDTI: # [ATGAA] # 42 223 # # TspEI: # [AATT] # 5 10 27 64 76 83 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 265 # Reported_sequences: 1 # Reported_hitcount: 42 #---------------------------------------