Peng Q, et al. (2025) Mechanism of Polygonum hydropiper reducing ethyl carbamate in Chinese rice wine (Huangjiu) brewing. Food Microbiol 125:104628 PMID:39448146
Peng Q, et al. (2025) Investigating the role of primary fungi in Huangjiu fermentation: Insights from flavor orientation and synthetic microbiomes. Food Microbiol 129:104765 PMID:40086991
Wang X, et al. (2024) Construction of an amylolytic Saccharomyces cerevisiae strain with high copies of α-amylase and glucoamylase genes integration for bioethanol production from sweet potato residue. Front Microbiol 15:1419293 PMID:39171266
Zheng H, et al. (2024)SSA4 Mediates Cd Tolerance via Activation of the Cis Element of VHS1 in Yeast and Enhances Cd Tolerance in Chinese Cabbage. Int J Mol Sci 25(20) PMID:39456809
Chen Y, et al. (2023) Development of a synthetic transcription factor-based S-adenosylmethionine biosensor in Saccharomyces cerevisiae. Biotechnol Lett 45(2):255-262 PMID:36550338
Kang J, et al. (2022) RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. Nucleic Acids Res 50(D1):D326-D332 PMID:34718726
Wang G, et al. (2022) Sgh1, an SR-like Protein, Is Involved in Fungal Development, Plant Infection, and Pre-mRNA Processing in Fusarium graminearum. J Fungi (Basel) 8(10) PMID:36294621
Zhang F, et al. (2022) Profiling Substrate Specificity of the SUMO Protease Ulp1 by the YESS-PSSC System to Advance the Conserved Mechanism for Substrate Cleavage. Int J Mol Sci 23(20) PMID:36293045
Zheng H, et al. (2022) Highly efficient rDNA-mediated multicopy integration based on the dynamic balance of rDNA in Saccharomyces cerevisiae. Microb Biotechnol 15(5):1511-1524 PMID:35098688
Zheng H, et al. (2021) The impact of different Saccharomyces cerevisiae strains on microbial composition and quality of Chinese rice wine fermentations. Yeast 38(2):147-156 PMID:33125759
Kapadia N, et al. (2020) Processive Activity of Replicative DNA Polymerases in the Replisome of Live Eukaryotic Cells. Mol Cell 80(1):114-126.e8 PMID:32916094
Li X, et al. (2020) Stress-seventy subfamily A 4, A member of HSP70, confers yeast cadmium tolerance in the loss of mitochondria pyruvate carrier 1. Plant Signal Behav 15(2):1719312 PMID:31985324
Hu W, et al. (2018) Mitochondrial accumulation of amyloid β (Aβ) peptides requires TOMM22 as a main Aβ receptor in yeast. J Biol Chem 293(33):12681-12689 PMID:29925587
Zheng H, et al. (2017) Analysis of Organization of the Interactome Using Dominating Sets: A Case Study on Cell Cycle Interaction Networks. IEEE/ACM Trans Comput Biol Bioinform 14(2):282-289 PMID:28368806
Mizeranschi A, et al. (2015) Evaluating a common semi-mechanistic mathematical model of gene-regulatory networks. BMC Syst Biol 9 Suppl 5(Suppl 5):S2 PMID:26356485
Wang H and Zheng H (2014) Organized Modularity in the Interactome: Evidence from the Analysis of Dynamic Organization in the Cell Cycle. IEEE/ACM Trans Comput Biol Bioinform 11(6):1264-70 PMID:26357062
Zhang S, et al. (2014) FigA, a putative homolog of low-affinity calcium system member Fig1 in Saccharomyces cerevisiae, is involved in growth and asexual and sexual development in Aspergillus nidulans. Eukaryot Cell 13(2):295-303 PMID:24376003
Cai B, et al. (2013) Integrating domain similarity to improve protein complexes identification in TAP-MS data. Proteome Sci 11(Suppl 1):S2 PMID:24565259
Cai Y, et al. (2013) Free energy profiles of base flipping in intercalative polycyclic aromatic hydrocarbon-damaged DNA duplexes: energetic and structural relationships to nucleotide excision repair susceptibility. Chem Res Toxicol 26(7):1115-25 PMID:23758590
Shen J, et al. (2012) Improvement of amorpha-4,11-diene production by a yeast-conform variant of Vitreoscilla hemoglobin. Z Naturforsch C J Biosci 67(3-4):195-207 PMID:22624336
Wang H and Zheng H (2012) Correlation of genomic features with dynamic modularity in the yeast interactome: a view from the structural perspective. IEEE Trans Nanobioscience 11(3):244-50 PMID:22987130
Cai B, et al. (2011) Detection of functional modules from protein interaction networks with an enhanced random walk based algorithm. Int J Comput Biol Drug Des 4(3):290-306 PMID:21778561
Chen J, et al. (2011) Arabidopsis RHD3 mediates the generation of the tubular ER network and is required for Golgi distribution and motility in plant cells. J Cell Sci 124(Pt 13):2241-52 PMID:21652628
Chen Y, et al. (2011) A conserved motif within RAP1 has diversified roles in telomere protection and regulation in different organisms. Nat Struct Mol Biol 18(2):213-21 PMID:21217703
Qi X and Zheng H (2011) Arabidopsis TRAPPII is functionally linked to Rab-A, but not Rab-D in polar protein trafficking in trans-Golgi network. Plant Signal Behav 6(11):1679-83 PMID:22067991
Tarsio M, et al. (2011) Consequences of loss of Vph1 protein-containing vacuolar ATPases (V-ATPases) for overall cellular pH homeostasis. J Biol Chem 286(32):28089-96 PMID:21669878
Beaudoin F, et al. (2009) Functional characterization of the Arabidopsis beta-ketoacyl-coenzyme A reductase candidates of the fatty acid elongase. Plant Physiol 150(3):1174-91 PMID:19439572
Browne F, et al. (2009) GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction. Source Code Biol Med 4:2 PMID:19171033
Hooker TS, et al. (2007) A core subunit of the RNA-processing/degrading exosome specifically influences cuticular wax biosynthesis in Arabidopsis. Plant Cell 19(3):904-13 PMID:17351114
Azuaje F, et al. (2006) Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. Proc IEEE Int Conf Data Min 2006:114-119 PMID:25698910
Zheng H, et al. (2005) Disruptions of the Arabidopsis Enoyl-CoA reductase gene reveal an essential role for very-long-chain fatty acid synthesis in cell expansion during plant morphogenesis. Plant Cell 17(5):1467-81 PMID:15829606
Surpin M, et al. (2003) The VTI family of SNARE proteins is necessary for plant viability and mediates different protein transport pathways. Plant Cell 15(12):2885-99 PMID:14615598
Zheng H, et al. (1999) The plant vesicle-associated SNARE AtVTI1a likely mediates vesicle transport from the trans-Golgi network to the prevacuolar compartment. Mol Biol Cell 10(7):2251-64 PMID:10397763