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  • Author: Shimada K
  • References

Author: Shimada K


References 27 references


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  • Hurst V, et al. (2024) Loss of cytoplasmic actin filaments raises nuclear actin levels to drive INO80C-dependent chromosome fragmentation. Nat Commun 15(1):9910 PMID:39548059
    • SGD Paper
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  • Shimada K, et al. (2024) TORC2 inhibition triggers yeast chromosome fragmentation through misregulated Base Excision Repair of clustered oxidation events. Nat Commun 15(1):9908 PMID:39548071
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  • Challa K, et al. (2021) Damage-induced chromatome dynamics link Ubiquitin ligase and proteasome recruitment to histone loss and efficient DNA repair. Mol Cell 81(4):811-829.e6 PMID:33529595
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  • Hurst V, et al. (2021) A regulatory phosphorylation site on Mec1 controls chromatin occupancy of RNA polymerases during replication stress. EMBO J 40(21):e108439 PMID:34569643
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  • Cheblal A, et al. (2020) DNA Damage-Induced Nucleosome Depletion Enhances Homology Search Independently of Local Break Movement. Mol Cell 80(2):311-326.e4 PMID:32970994
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  • Marcomini I, et al. (2018) Asymmetric Processing of DNA Ends at a Double-Strand Break Leads to Unconstrained Dynamics and Ectopic Translocation. Cell Rep 24(10):2614-2628.e4 PMID:30184497
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  • Deshpande I, et al. (2017) Structural Basis of Mec1-Ddc2-RPA Assembly and Activation on Single-Stranded DNA at Sites of Damage. Mol Cell 68(2):431-445.e5 PMID:29033322
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  • Poli J, et al. (2016) Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress. Genes Dev 30(3):337-54 PMID:26798134
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  • Seeber A, et al. (2016) RPA Mediates Recruitment of MRX to Forks and Double-Strand Breaks to Hold Sister Chromatids Together. Mol Cell 64(5):951-966 PMID:27889450
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  • Hustedt N, et al. (2015) Yeast PP4 interacts with ATR homolog Ddc2-Mec1 and regulates checkpoint signaling. Mol Cell 57(2):273-89 PMID:25533186
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  • Hustedt N and Shimada K (2014) Analyzing DNA replication checkpoint in budding yeast. Methods Mol Biol 1170:321-41 PMID:24906321
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  • Shimada K, et al. (2013) TORC2 signaling pathway guarantees genome stability in the face of DNA strand breaks. Mol Cell 51(6):829-39 PMID:24035500
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  • Hegnauer AM, et al. (2012) An N-terminal acidic region of Sgs1 interacts with Rpa70 and recruits Rad53 kinase to stalled forks. EMBO J 31(18):3768-83 PMID:22820947
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  • Shimada K and Gasser SM (2012) DNA replication: Pif1 pulls the plug on stalled replication forks. Curr Biol 22(10):R404-5 PMID:22625857
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  • Gehlen LR, et al. (2011) Nuclear geometry and rapid mitosis ensure asymmetric episome segregation in yeast. Curr Biol 21(1):25-33 PMID:21194950
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  • Schleker T, et al. (2010) Cell cycle-dependent phosphorylation of Rad53 kinase by Cdc5 and Cdc28 modulates checkpoint adaptation. Cell Cycle 9(2):350-63 PMID:20046099
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  • Yoshida T, et al. (2010) Actin-related protein Arp6 influences H2A.Z-dependent and -independent gene expression and links ribosomal protein genes to nuclear pores. PLoS Genet 6(4):e1000910 PMID:20419146
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  • Varela E, et al. (2009) Lte1, Cdc14 and MEN-controlled Cdk inactivation in yeast coordinate rDNA decompaction with late telophase progression. EMBO J 28(11):1562-75 PMID:19387493
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  • Shimada K, et al. (2008) Ino80 chromatin remodeling complex promotes recovery of stalled replication forks. Curr Biol 18(8):566-75 PMID:18406137
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  • Shimada K and Gasser SM (2007) The origin recognition complex functions in sister-chromatid cohesion in Saccharomyces cerevisiae. Cell 128(1):85-99 PMID:17218257
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  • Wang LY, et al. (2005) Response of fission yeast to toxic cations involves cooperative action of the stress-activated protein kinase Spc1/Sty1 and the Hal4 protein kinase. Mol Cell Biol 25(10):3945-55 PMID:15870269
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  • Cobb JA, et al. (2004) Redundancy, insult-specific sensors and thresholds: unlocking the S-phase checkpoint response. Curr Opin Genet Dev 14(3):292-300 PMID:15172673
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  • Cobb JA, et al. (2003) DNA polymerase stabilization at stalled replication forks requires Mec1 and the RecQ helicase Sgs1. EMBO J 22(16):4325-36 PMID:12912929
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  • Pasero P, et al. (2003) Multiple roles of replication forks in S phase checkpoints: sensors, effectors and targets. Cell Cycle 2(6):568-72 PMID:14512770
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  • Duncker BP, et al. (2002) An N-terminal domain of Dbf4p mediates interaction with both origin recognition complex (ORC) and Rad53p and can deregulate late origin firing. Proc Natl Acad Sci U S A 99(25):16087-92 PMID:12441400
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  • Shimada K, et al. (2002) ORC and the intra-S-phase checkpoint: a threshold regulates Rad53p activation in S phase. Genes Dev 16(24):3236-52 PMID:12502744
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  • Heun P, et al. (2001) Chromosome dynamics in the yeast interphase nucleus. Science 294(5549):2181-6 PMID:11739961
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