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  • Author: Pir P
  • References

Author: Pir P


References 21 references


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  • Boccaletto P, et al. (2022) MODOMICS: a database of RNA modification pathways. 2021 update. Nucleic Acids Res 50(D1):D231-D235 PMID:34893873
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  • Cesur MF, et al. (2022) Genome-Wide Analysis of Yeast Metabolic Cycle through Metabolic Network Models Reveals Superiority of Integrated ATAC-seq Data over RNA-seq Data. mSystems 7(3):e0134721 PMID:35695574
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  • Çakır T, et al. (2019) Next-Generation Genome-Scale Models Incorporating Multilevel 'Omics Data: From Yeast to Human. Methods Mol Biol 2049:347-363 PMID:31602621
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  • Dikicioglu D, et al. (2014) Yeast cells with impaired drug resistance accumulate glycerol and glucose. Mol Biosyst 10(1):93-102 PMID:24157722
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  • Alcasabas AA, et al. (2013) Control analysis of the eukaryotic cell cycle using gene copy-number series in yeast tetraploids. BMC Genomics 14:744 PMID:24176122
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  • Dikicioglu D, et al. (2013) Predicting complex phenotype-genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory. Biotechnol J 8(9):1017-34 PMID:24031036
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  • Smallbone K, et al. (2013) A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes. FEBS Lett 587(17):2832-41 PMID:23831062
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  • Mülleder M, et al. (2012) A prototrophic deletion mutant collection for yeast metabolomics and systems biology. Nat Biotechnol 30(12):1176-8 PMID:23222782
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  • Pir P, et al. (2012) The genetic control of growth rate: a systems biology study in yeast. BMC Syst Biol 6:4 PMID:22244311
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  • Bilsland E, et al. (2011) Functional expression of parasite drug targets and their human orthologs in yeast. PLoS Negl Trop Dis 5(10):e1320 PMID:21991399
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  • Carroll KM, et al. (2011) Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach. Mol Cell Proteomics 10(12):M111.007633 PMID:21931151
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  • Dikicioglu D, et al. (2011) How yeast re-programmes its transcriptional profile in response to different nutrient impulses. BMC Syst Biol 5:148 PMID:21943358
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  • Lanthaler K, et al. (2011) Genome-wide assessment of the carriers involved in the cellular uptake of drugs: a model system in yeast. BMC Biol 9:70 PMID:22023736
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  • de Clare M, et al. (2011) Haploinsufficiency and the sex chromosomes from yeasts to humans. BMC Biol 9:15 PMID:21356089
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  • Dobson PD, et al. (2010) Further developments towards a genome-scale metabolic model of yeast. BMC Syst Biol 4:145 PMID:21029416
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  • Gutteridge A, et al. (2010) Nutrient control of eukaryote cell growth: a systems biology study in yeast. BMC Biol 8:68 PMID:20497545
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  • King RD, et al. (2009) The automation of science. Science 324(5923):85-9 PMID:19342587
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  • Dikicioglu D, et al. (2008) Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae. Appl Environ Microbiol 74(18):5809-16 PMID:18586960
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  • Pir P, et al. (2008) Exometabolic and transcriptional response in relation to phenotype and gene copy number in respiration-related deletion mutants of S. cerevisiae. Yeast 25(9):661-72 PMID:18727146
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  • Pir P, et al. (2006) Annotation of unknown yeast ORFs by correlation analysis of microarray data and extensive literature searches. Yeast 23(7):553-71 PMID:16710832
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  • Pir P, et al. (2006) Integrative investigation of metabolic and transcriptomic data. BMC Bioinformatics 7:203 PMID:16611354
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