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  • Author: Nguyen Ba AN
  • References

Author: Nguyen Ba AN


References 23 references


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  • Bakerlee CW, et al. (2022) Idiosyncratic epistasis leads to global fitness-correlated trends. Science 376(6593):630-635 PMID:35511982
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  • Chochinov CA and Nguyen Ba AN (2022) Bulk-Fitness Measurements Using Barcode Sequencing Analysis in Yeast. Methods Mol Biol 2477:399-415 PMID:35524129
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  • Nguyen Ba AN, et al. (2022) Barcoded bulk QTL mapping reveals highly polygenic and epistatic architecture of complex traits in yeast. Elife 11 PMID:35147078
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  • Bakerlee CW, et al. (2021) Dynamics and variability in the pleiotropic effects of adaptation in laboratory budding yeast populations. Elife 10 PMID:34596043
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  • Johnson MS, et al. (2021) Phenotypic and molecular evolution across 10,000 generations in laboratory budding yeast populations. Elife 10 PMID:33464204
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  • Tung S, et al. (2021) The genetic basis of differential autodiploidization in evolving yeast populations. G3 (Bethesda) 11(8) PMID:34849811
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  • Jerison ER, et al. (2020) Chance and necessity in the pleiotropic consequences of adaptation for budding yeast. Nat Ecol Evol 4(4):601-611 PMID:32152531
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  • Kuzmin E, et al. (2020) Exploring whole-genome duplicate gene retention with complex genetic interaction analysis. Science 368(6498) PMID:32586993
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  • Kaminski Strauss S, et al. (2019) Evolthon: A community endeavor to evolve lab evolution. PLoS Biol 17(3):e3000182 PMID:30925180
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  • Nguyen Ba AN, et al. (2019) High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast. Nature 575(7783):494-499 PMID:31723263
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  • Zarin T, et al. (2019) Proteome-wide signatures of function in highly diverged intrinsically disordered regions. Elife 8 PMID:31264965
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  • Nguyen Ba AN, et al. (2017) Parallel reorganization of protein function in the spindle checkpoint pathway through evolutionary paths in the fitness landscape that appear neutral in laboratory experiments. PLoS Genet 13(4):e1006735 PMID:28410373
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  • Youn JY, et al. (2017) Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library. G3 (Bethesda) 7(3):911-921 PMID:28122947
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  • Zarin T, et al. (2017) Selection maintains signaling function of a highly diverged intrinsically disordered region. Proc Natl Acad Sci U S A 114(8):E1450-E1459 PMID:28167781
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  • Gógl G, et al. (2015) The Structure of an NDR/LATS Kinase-Mob Complex Reveals a Novel Kinase-Coactivator System and Substrate Docking Mechanism. PLoS Biol 13(5):e1002146 PMID:25966461
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  • Khan T, et al. (2015) Polymorphism Analysis Reveals Reduced Negative Selection and Elevated Rate of Insertions and Deletions in Intrinsically Disordered Protein Regions. Genome Biol Evol 7(6):1815-26 PMID:26047845
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  • Bergström A, et al. (2014) A high-definition view of functional genetic variation from natural yeast genomes. Mol Biol Evol 31(4):872-88 PMID:24425782
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  • Nguyen Ba AN, et al. (2014) Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences. PLoS Comput Biol 10(12):e1003977 PMID:25474245
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  • Liti G, et al. (2013) High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome. BMC Genomics 14:69 PMID:23368932
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  • Lai AC, et al. (2012) Predicting kinase substrates using conservation of local motif density. Bioinformatics 28(7):962-9 PMID:22302575
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  • Sharifpoor S, et al. (2011) A quantitative literature-curated gold standard for kinase-substrate pairs. Genome Biol 12(4):R39 PMID:21492431
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  • Nguyen Ba AN and Moses AM (2010) Evolution of characterized phosphorylation sites in budding yeast. Mol Biol Evol 27(9):2027-37 PMID:20368267
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  • Nguyen Ba AN, et al. (2009) NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinformatics 10:202 PMID:19563654
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