Author: Gerstein MB

References 11 references

Download References (.nbib)

Wang D, et al. (2015) Loregic: a method to characterize the cooperative logic of regulatory factors. PLoS Comput Biol 11(4):e1004132 PMID:25884877
Cheng C, et al. (2011) Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors. Genome Biol 12(11):R111 PMID:22060676
Bhardwaj N, et al. (2010) Rewiring of transcriptional regulatory networks: hierarchy, rather than connectivity, better reflects the importance of regulators. Sci Signal 3(146):ra79 PMID:21045205
Bhardwaj N, et al. (2010) Analysis of combinatorial regulation: scaling of partnerships between regulators with the number of governed targets. PLoS Comput Biol 6(5):e1000755 PMID:20523742
Mok J, et al. (2010) Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs. Sci Signal 3(109):ra12 PMID:20159853
Ni L, et al. (2009) Dynamic and complex transcription factor binding during an inducible response in yeast. Genes Dev 23(11):1351-63 PMID:19487574
Tonikian R, et al. (2009) Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. PLoS Biol 7(10):e1000218 PMID:19841731
Xia Y, et al. (2009) Integrated assessment of genomic correlates of protein evolutionary rate. PLoS Comput Biol 5(6):e1000413 PMID:19521505
Kim PM, et al. (2006) Relating three-dimensional structures to protein networks provides evolutionary insights. Science 314(5807):1938-41 PMID:17185604
Kumar A, et al. (2004) Large-scale mutagenesis of the yeast genome using a Tn7-derived multipurpose transposon. Genome Res 14(10A):1975-86 PMID:15466296
Kumar A, et al. (2002) An integrated approach for finding overlooked genes in yeast. Nat Biotechnol 20(1):58-63 PMID:11753363