AboutBlogDownloadExploreHelpGet Data
Email Us Mastodon BlueSky Facebook LinkedIn YouTube
Saccharomyces Genome Database
  • Saccharomyces Genome Database
    Saccharomyces Genome Database
  • Menu
  • Analyze
    • Gene Lists
    • BLAST
    • Fungal BLAST
    • GO Term Finder
    • GO Slim Mapper
    • Pattern Matching
    • Design Primers
    • Restriction Site Mapper
  • Sequence
    • Download
    • Genome Browser
    • BLAST
    • Fungal BLAST
    • Gene/Sequence Resources
    • Reference Genome
      • Download Genome
      • Genome Snapshot
      • Chromosome History
      • Systematic Sequencing Table
      • Original Sequence Papers
    • Strains and Species
      • Variant Viewer
      • Align Strain Sequences
    • Resources
      • UniProtKB
      • InterPro (EBI)
      • HomoloGene (NCBI)
      • YGOB (Trinity College)
      • AlphaFold
  • Function
    • Gene Ontology
      • GO Term Finder
      • GO Slim Mapper
      • GO Slim Mapping File
    • Expression
    • Biochemical Pathways
    • Phenotypes
      • Browse All Phenotypes
    • Interactions
    • YeastGFP
    • Resources
      • GO Consortium
      • BioGRID (U. Toronto)
  • Literature
    • Full-text Search
    • New Yeast Papers
    • YeastBook
    • Resources
      • PubMed (NCBI)
      • PubMed Central (NCBI)
      • Google Scholar
  • Community
    • Community Forum
    • Colleague Information
      • Find a Colleague
      • Add or Update Info
      • Find a Yeast Lab
    • Education
    • Meetings
    • Nomenclature
      • Submit a Gene Registration
      • Gene Registry
      • Nomenclature Conventions
    • Methods and Reagents
      • Strains
    • Historical Data
      • Physical & Genetic Maps
      • Genetic Maps
      • Genetic Loci
      • ORFMap Chromosomes
      • Sequence
    • Submit Data
    • API
  • Info & Downloads
    • About
    • Blog
    • Downloads
    • Site Map
    • Help
  • Author: Farabaugh PJ
  • References

Author: Farabaugh PJ


References 34 references


No citations for this author.

Download References (.nbib)

  • Joshi K, et al. (2024) An evolutionarily conserved phosphoserine-arginine salt bridge in the interface between ribosomal proteins uS4 and uS5 regulates translational accuracy in Saccharomyces cerevisiae. Nucleic Acids Res 52(7):3989-4001 PMID:38340338
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Saleh S and Farabaugh PJ (2023) Posttranscriptional modification to the core of tRNAs modulates translational misreading errors. RNA 30(1):37-51 PMID:37907335
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Joshi K, et al. (2019) The problem of genetic code misreading during protein synthesis. Yeast 36(1):35-42 PMID:30557461
    • SGD Paper
    • DOI full text
    • PubMed
  • Joshi K, et al. (2018) Codon-specific effects of tRNA anticodon loop modifications on translational misreading errors in the yeast Saccharomyces cerevisiae. Nucleic Acids Res 46(19):10331-10339 PMID:30060218
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Suresh S, et al. (2016) Erratum to: ribosomal protein and biogenesis factors affect multiple steps during movement of the Saccharomyces cerevisiae Ty1 retrotransposon. Mob DNA 7:5 PMID:26865864
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Suresh S, et al. (2015) Ribosomal protein and biogenesis factors affect multiple steps during movement of the Saccharomyces cerevisiae Ty1 retrotransposon. Mob DNA 6:22 PMID:26664557
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Türkel S, et al. (2011) Glucose signalling pathway controls the programmed ribosomal frameshift efficiency in retroviral-like element Ty3 in Saccharomyces cerevisiae. Yeast 28(11):799-808 PMID:21989811
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Dakshinamurthy A, et al. (2010) BUD22 affects Ty1 retrotransposition and ribosome biogenesis in Saccharomyces cerevisiae. Genetics 185(4):1193-205 PMID:20498295
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Kramer EB, et al. (2010) A comprehensive analysis of translational missense errors in the yeast Saccharomyces cerevisiae. RNA 16(9):1797-808 PMID:20651030
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Guarraia C, et al. (2007) Saturation mutagenesis of a +1 programmed frameshift-inducing mRNA sequence derived from a yeast retrotransposon. RNA 13(11):1940-7 PMID:17881742
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Taliaferro D and Farabaugh PJ (2007) An mRNA sequence derived from the yeast EST3 gene stimulates programmed +1 translational frameshifting. RNA 13(4):606-13 PMID:17329356
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Farabaugh PJ, et al. (2006) Evolution of +1 programmed frameshifting signals and frameshift-regulating tRNAs in the order Saccharomycetales. J Mol Evol 63(4):545-61 PMID:16838213
    • SGD Paper
    • DOI full text
    • PubMed
  • Raman A, et al. (2006) An mRNA sequence derived from a programmed frameshifting signal decreases codon discrimination during translation initiation. RNA 12(7):1154-60 PMID:16682566
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Salas-Marco J, et al. (2006) Distinct paths to stop codon reassignment by the variant-code organisms Tetrahymena and Euplotes. Mol Cell Biol 26(2):438-47 PMID:16382136
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Stahl G, et al. (2004) Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae. Eukaryot Cell 3(2):331-8 PMID:15075263
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Urbonavicius J, et al. (2003) Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting. RNA 9(6):760-8 PMID:12756333
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Li Z, et al. (2001) Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA. RNA 7(2):275-84 PMID:11233984
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Stahl G, et al. (2001) Programmed +1 translational frameshifting in the yeast Saccharomyces cerevisiae results from disruption of translational error correction. Cold Spring Harb Symp Quant Biol 66:249-58 PMID:12762026
    • SGD Paper
    • DOI full text
    • PubMed
  • Bidou L, et al. (2000) Nonsense-mediated decay mutants do not affect programmed -1 frameshifting. RNA 6(7):952-61 PMID:10917592
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Burck CL, et al. (1999) Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift. RNA 5(11):1451-7 PMID:10580473
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Sundararajan A, et al. (1999) Near-cognate peptidyl-tRNAs promote +1 programmed translational frameshifting in yeast. Mol Cell 4(6):1005-15 PMID:10635325
    • SGD Paper
    • DOI full text
    • PubMed
  • Farabaugh PJ and Vimaladithan A (1998) Effect of frameshift-inducing mutants of elongation factor 1alpha on programmed +1 frameshifting in yeast. RNA 4(1):38-46 PMID:9436906
    • SGD Paper
    • PMC full text
    • PubMed
  • Türkel S, et al. (1997) GCR1-dependent transcriptional activation of yeast retrotransposon Ty2-917. Yeast 13(10):917-30 PMID:9271107
    • SGD Paper
    • DOI full text
    • PubMed
  • Farabaugh PJ (1995) Post-transcriptional regulation of transposition by Ty retrotransposons of Saccharomyces cerevisiae. J Biol Chem 270(18):10361-4 PMID:7737964
    • SGD Paper
    • DOI full text
    • PubMed
  • Pande S, et al. (1995) Pulling the ribosome out of frame by +1 at a programmed frameshift site by cognate binding of aminoacyl-tRNA. Mol Cell Biol 15(1):298-304 PMID:7799937
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Farabaugh PJ, et al. (1993) Three downstream sites repress transcription of a Ty2 retrotransposon in Saccharomyces cerevisiae. Mol Cell Biol 13(4):2081-90 PMID:8384303
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Farabaugh PJ, et al. (1993) A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: frameshifting without tRNA slippage. Cell 74(1):93-103 PMID:8267715
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Kawakami K, et al. (1993) A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae. Genetics 135(2):309-20 PMID:8243996
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Türkel S and Farabaugh PJ (1993) Interspersion of an unusual GCN4 activation site with a complex transcriptional repression site in Ty2 elements of Saccharomyces cerevisiae. Mol Cell Biol 13(4):2091-103 PMID:8384304
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Liao XB, et al. (1987) The upstream activation site of a Ty2 element of yeast is necessary but not sufficient to promote maximal transcription of the element. Proc Natl Acad Sci U S A 84(23):8520-4 PMID:2825192
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Donahue TF, et al. (1982) The nucleotide sequence of the HIS4 region of yeast. Gene 18(1):47-59 PMID:7049842
    • SGD Paper
    • DOI full text
    • PubMed
  • Donahue TF, et al. (1981) Suppressible four-base glycine and proline codons in yeast. Science 212(4493):455-7 PMID:7010605
    • SGD Paper
    • DOI full text
    • PubMed
  • Farabaugh PJ and Fink GR (1980) Insertion of the eukaryotic transposable element Ty1 creates a 5-base pair duplication. Nature 286(5771):352-6 PMID:6250062
    • SGD Paper
    • DOI full text
    • PubMed
  • Roeder GS, et al. (1980) The origins of gene instability in yeast. Science 209(4463):1375-80 PMID:6251544
    • SGD Paper
    • DOI full text
    • PubMed
  • SGD
  • About
  • Blog
  • Help
  • Privacy Policy
  • Creative Commons License
© Stanford University, Stanford, CA 94305.
Back to Top