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  • Author: Denu JM
  • References

Author: Denu JM


References 36 references


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  • Converso C, et al. (2025) H2A.Z deposition by the SWR complex is stimulated by polyadenine DNA sequences in nucleosomes. PLoS Biol 23(5):e3003059 PMID:40354500
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Albaugh BN and Denu JM (2021) Catalysis by protein acetyltransferase Gcn5. Biochim Biophys Acta Gene Regul Mech 1864(2):194627 PMID:32841743
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Kuznetsov VI, et al. (2018) General method for rapid purification of native chromatin fragments. J Biol Chem 293(31):12271-12282 PMID:29794135
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Smith BC, et al. (2012) Structural and kinetic isotope effect studies of nicotinamidase (Pnc1) from Saccharomyces cerevisiae. Biochemistry 51(1):243-56 PMID:22229411
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Albaugh BN, et al. (2011) Autoacetylation of the histone acetyltransferase Rtt109. J Biol Chem 286(28):24694-701 PMID:21606491
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Arnold KM, et al. (2011) Processing mechanism and substrate selectivity of the core NuA4 histone acetyltransferase complex. Biochemistry 50(5):727-37 PMID:21182309
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Albaugh BN, et al. (2010) Kinetic mechanism of the Rtt109-Vps75 histone acetyltransferase-chaperone complex. Biochemistry 49(30):6375-85 PMID:20560668
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Kolonko EM, et al. (2010) Catalytic activation of histone acetyltransferase Rtt109 by a histone chaperone. Proc Natl Acad Sci U S A 107(47):20275-80 PMID:21057107
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tong L and Denu JM (2010) Function and metabolism of sirtuin metabolite O-acetyl-ADP-ribose. Biochim Biophys Acta 1804(8):1617-25 PMID:20176146
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tong L, et al. (2009) Hydrolase regulates NAD+ metabolites and modulates cellular redox. J Biol Chem 284(17):11256-66 PMID:19251690
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Berndsen CE, et al. (2008) Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75. Nat Struct Mol Biol 15(9):948-56 PMID:19172748
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Lee S, et al. (2008) Quantification of endogenous sirtuin metabolite O-acetyl-ADP-ribose. Anal Biochem 383(2):174-9 PMID:18812159
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Berndsen CE, et al. (2007) Nucleosome recognition by the Piccolo NuA4 histone acetyltransferase complex. Biochemistry 46(8):2091-9 PMID:17274630
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Berndsen CE, et al. (2007) Catalytic mechanism of a MYST family histone acetyltransferase. Biochemistry 46(3):623-9 PMID:17223684
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Denu JM (2007) Vitamins and aging: pathways to NAD+ synthesis. Cell 129(3):453-4 PMID:17482537
    • SGD Paper
    • DOI full text
    • PubMed
  • Tsubota T, et al. (2007) Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes. Mol Cell 25(5):703-12 PMID:17320445
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Borra MT, et al. (2005) Mechanism of human SIRT1 activation by resveratrol. J Biol Chem 280(17):17187-95 PMID:15749705
    • SGD Paper
    • DOI full text
    • PubMed
  • Borra MT and Denu JM (2004) Quantitative assays for characterization of the Sir2 family of NAD(+)-dependent deacetylases. Methods Enzymol 376:171-87 PMID:14975305
    • SGD Paper
    • DOI full text
    • PubMed
  • Borra MT, et al. (2004) Substrate specificity and kinetic mechanism of the Sir2 family of NAD+-dependent histone/protein deacetylases. Biochemistry 43(30):9877-87 PMID:15274642
    • SGD Paper
    • DOI full text
    • PubMed
  • Schmidt MT, et al. (2004) Coenzyme specificity of Sir2 protein deacetylases: implications for physiological regulation. J Biol Chem 279(38):40122-9 PMID:15269219
    • SGD Paper
    • DOI full text
    • PubMed
  • Denu JM (2003) Linking chromatin function with metabolic networks: Sir2 family of NAD(+)-dependent deacetylases. Trends Biochem Sci 28(1):41-8 PMID:12517451
    • SGD Paper
    • DOI full text
    • PubMed
  • Jackson MD, et al. (2003) Mechanism of nicotinamide inhibition and transglycosidation by Sir2 histone/protein deacetylases. J Biol Chem 278(51):50985-98 PMID:14522996
    • SGD Paper
    • DOI full text
    • PubMed
  • North BJ, et al. (2003) The human Sir2 ortholog, SIRT2, is an NAD+-dependent tubulin deacetylase. Mol Cell 11(2):437-44 PMID:12620231
    • SGD Paper
    • DOI full text
    • PubMed
  • Borra MT, et al. (2002) Conserved enzymatic production and biological effect of O-acetyl-ADP-ribose by silent information regulator 2-like NAD+-dependent deacetylases. J Biol Chem 277(15):12632-41 PMID:11812793
    • SGD Paper
    • DOI full text
    • PubMed
  • Boyer LA, et al. (2002) Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes. Mol Cell 10(4):935-42 PMID:12419236
    • SGD Paper
    • DOI full text
    • PubMed
  • Dutnall RN and Denu JM (2002) Methyl magic and HAT tricks. Nat Struct Biol 9(12):888-91 PMID:12447351
    • SGD Paper
    • DOI full text
    • PubMed
  • Jackson MD and Denu JM (2002) Structural identification of 2'- and 3'-O-acetyl-ADP-ribose as novel metabolites derived from the Sir2 family of beta -NAD+-dependent histone/protein deacetylases. J Biol Chem 277(21):18535-44 PMID:11893743
    • SGD Paper
    • DOI full text
    • PubMed
  • Langer MR, et al. (2002) Modulating acetyl-CoA binding in the GCN5 family of histone acetyltransferases. J Biol Chem 277(30):27337-44 PMID:11994311
    • SGD Paper
    • DOI full text
    • PubMed
  • Rafty LA, et al. (2002) Analysis of O-acetyl-ADP-ribose as a target for Nudix ADP-ribose hydrolases. J Biol Chem 277(49):47114-22 PMID:12370179
    • SGD Paper
    • DOI full text
    • PubMed
  • Langer MR, et al. (2001) Mutational analysis of conserved residues in the GCN5 family of histone acetyltransferases. J Biol Chem 276(33):31321-31 PMID:11397810
    • SGD Paper
    • DOI full text
    • PubMed
  • Kim Y, et al. (2000) A continuous, nonradioactive assay for histone acetyltransferases. Anal Biochem 280(2):308-14 PMID:10790315
    • SGD Paper
    • DOI full text
    • PubMed
  • Tanner KG, et al. (2000) Silent information regulator 2 family of NAD- dependent histone/protein deacetylases generates a unique product, 1-O-acetyl-ADP-ribose. Proc Natl Acad Sci U S A 97(26):14178-82 PMID:11106374
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tanner KG, et al. (2000) Kinetic mechanism of the histone acetyltransferase GCN5 from yeast. J Biol Chem 275(29):22048-55 PMID:10811654
    • SGD Paper
    • DOI full text
    • PubMed
  • Tanner KG, et al. (1999) Catalytic mechanism and function of invariant glutamic acid 173 from the histone acetyltransferase GCN5 transcriptional coactivator. J Biol Chem 274(26):18157-60 PMID:10373413
    • SGD Paper
    • DOI full text
    • PubMed
  • Denu JM and Dixon JE (1998) Protein tyrosine phosphatases: mechanisms of catalysis and regulation. Curr Opin Chem Biol 2(5):633-41 PMID:9818190
    • SGD Paper
    • DOI full text
    • PubMed
  • Yuvaniyama J, et al. (1996) Crystal structure of the dual specificity protein phosphatase VHR. Science 272(5266):1328-31 PMID:8650541
    • SGD Paper
    • DOI full text
    • PubMed
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