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Reference: Birney E, et al. (2006) Ensembl 2006. Nucleic Acids Res 34(Database issue):D556-61

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Abstract

The Ensembl (http://www.ensembl.org/) project provides a comprehensive and integrated source of annotation of large genome sequences. Over the last year the number of genomes available from the Ensembl site has increased from 4 to 19, with the addition of the mammalian genomes of Rhesus macaque and Opossum, the chordate genome of Ciona intestinalis and the import and integration of the yeast genome. The year has also seen extensive improvements to both data analysis and presentation, with the introduction of a redesigned website, the addition of RNA gene and regulatory annotation and substantial improvements to the integration of human genome variation data.

Reference Type
Journal Article | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't
Authors
Birney E, Andrews D, Caccamo M, Chen Y, Clarke L, Coates G, Cox T, Cunningham F, Curwen V, Cutts T, ... Show all
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Gene Ontology Annotations

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Gene/Complex Qualifier Gene Ontology Term Aspect Annotation Extension Evidence Method Source Assigned On Reference

Phenotype Annotations

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Gene Phenotype Experiment Type Mutant Information Strain Background Chemical Details Reference

Disease Annotations

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Gene Disease Ontology Term Qualifier Evidence Method Source Assigned On Reference

Regulation Annotations

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Regulator Target Direction Regulation Of Happens During Method Evidence

Post-translational Modifications

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Site Modification Modifier Reference

Interaction Annotations

Genetic Interactions

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Interactor Interactor Allele Assay Annotation Action Phenotype SGA score P-value Source Reference

Physical Interactions

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Interactor Interactor Assay Annotation Action Modification Source Reference

Functional Complementation Annotations

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Gene Species Gene ID Strain background Direction Details Source Reference

Published Datasets

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Dataset Description Keywords Number of Conditions Reference

Downloadable Files

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File Description