Genome-wide Analysis papers


Citation Topic(s)
Ohta E, et al.  (2016) Metabolomic approach for improving ethanol stress tolerance in Saccharomyces cerevisiae. J Biosci Bioeng 121(4):399-405 Omics
Olafsson G and Thorpe PH  (2016) Synthetic Physical Interactions Map Kinetochore-Checkpoint Activation Regions. G3 (Bethesda) 6(8):2531-42 Omics
Pakchuen S, et al.  (2016) Physical Association of Saccharomyces cerevisiae Polo-like Kinase Cdc5 with Chromosomal Cohesin Facilitates DNA Damage Response. J Biol Chem 291(33):17228-46 Omics
Pancsa R, et al.  (2016) Computational analysis of translational readthrough proteins in Drosophila and yeast reveals parallels to alternative splicing. Sci Rep 6():32142 Omics
Panja C, et al.  (2016) Label-Free Proteomic Analysis of Flavohemoglobin Deleted Strain of Saccharomyces cerevisiae. Int J Proteomics 2016():8302423 Omics
Patrick R, et al.  (2016) Prediction of kinase-specific phosphorylation sites through an integrative model of protein context and sequence. Biochim Biophys Acta 1864(11):1599-608 Omics
Paul B and Montpetit B  (2016) Altered RNA processing and export lead to retention of mRNAs near transcription sites and nuclear pore complexes or within the nucleolus. Mol Biol Cell 27(17):2742-56 Omics
Paulo JA, et al.  (2016) Quantitative mass spectrometry-based multiplexing compares the abundance of 5000 S. cerevisiae proteins across 10 carbon sources. J Proteomics 148():85-93 Omics
Pautasso C, et al.  (2016) Identification of novel transcriptional regulators of PKA subunits in Saccharomyces cerevisiae by quantitative promoter-reporter screening. FEMS Yeast Res 16(5) Omics
Payen C, et al.  (2016) High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations. PLoS Genet 12(10):e1006339 Omics
Peace JM, et al.  (2016) Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase. Genome Res 26(3):365-75 Omics
Petty EL, et al.  (2016) Promotion of Cell Viability and Histone Gene Expression by the Acetyltransferase Gcn5 and the Protein Phosphatase PP2A in Saccharomyces cerevisiae. Genetics 203(4):1693-707 Omics
Pfammatter S, et al.  (2016) Improvement of Quantitative Measurements in Multiplex Proteomics Using High-Field Asymmetric Waveform Spectrometry. J Proteome Res 15(12):4653-4665 Omics
Phanse S, et al.  (2016) Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Data Brief 6():715-21 Omics
Poli J, et al.  (2016) Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress. Genes Dev 30(3):337-54 Omics
Portela RM, et al.  (2016) Synthetic Core Promoters as Universal Parts for Fine-Tuning Expression in Different Yeast Species. ACS Synth Biol () Omics
Prasanth KR, et al.  (2016) Screening a yeast library of temperature-sensitive mutants reveals a role for actin in tombusvirus RNA recombination. Virology 489():233-42 Omics
Prevorovsky M, et al.  (2016) Workflow for Genome-Wide Determination of Pre-mRNA Splicing Efficiency from Yeast RNA-seq Data. Biomed Res Int 2016():4783841 Omics
Prosser DC, et al.  (2016) Applications of pHluorin for Quantitative, Kinetic and High-throughput Analysis of Endocytosis in Budding Yeast. J Vis Exp (116) Omics
Puchta O, et al.  (2016) Network of epistatic interactions within a yeast snoRNA. Science 352(6287):840-4 Omics
Puig-Castellvi F, et al.  (2016) (1)H NMR metabolomic study of auxotrophic starvation in yeast using Multivariate Curve Resolution-Alternating Least Squares for Pathway Analysis. Sci Rep 6():30982 Omics
Putnam CD, et al.  (2016) A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers. Nat Commun 7():11256 Omics
Qiu C, et al.  (2016) High-Resolution Phenotypic Landscape of the RNA Polymerase II Trigger Loop. PLoS Genet 12(11):e1006321 Omics
Qiu H, et al.  (2016) Genome-wide cooperation by HAT Gcn5, remodeler SWI/SNF, and chaperone Ydj1 in promoter nucleosome eviction and transcriptional activation. Genome Res 26(2):211-25 Omics
Raguz Nakic Z, et al.  (2016) Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae. BMC Syst Biol 10(1):104 Omics
Rahi SJ, et al.  (2016) The CDK-APC/C Oscillator Predominantly Entrains Periodic Cell-Cycle Transcription. Cell 165(2):475-87 Omics
Raja V, et al.  (2016) Loss of cardiolipin leads to perturbation of acetyl-CoA synthesis. J Biol Chem () Omics
Ramos LM, et al.  (2016) Yeast rRNA Expansion Segments: Folding and Function. J Mol Biol 428(20):4048-4059 Omics
Ramus C, et al.  (2016) Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief 6():286-94 Omics
Ravarani CN, et al.  (2016) Affinity and competition for TBP are molecular determinants of gene expression noise. Nat Commun 7():10417 Omics