Genome-wide Analysis papers Help

Citation Topic(s)
Besozzi D, et al.  (2012) The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae. EURASIP J Bioinform Syst Biol 2012(1):10 Computational analysis , Omics
Bester MC, et al.  (2012) Many Saccharomyces cerevisiae Cell Wall Protein Encoding Genes Are Coregulated by Mss11, but Cellular Adhesion Phenotypes Appear Only Flo Protein Dependent. G3 (Bethesda) 2(1):131-41 Genomic expression study , Omics
Bhat P, et al.  (2012) Computational Selection of Transcriptomics Experiments Improves Guilt-by-Association Analyses. PLoS One 7(8):e39681 Computational analysis , Omics
Biliouris K, et al.  (2012) Stochastic simulations of a synthetic bacteria-yeast ecosystem. BMC Syst Biol 6(1):58 Computational analysis , Omics
Blackman RK, et al.  (2012) Mitochondrial electron transport is the cellular target of the oncology drug elesclomol. PLoS One 7(1):e29798 Large-scale phenotype analysis , Omics
Blount BA, et al.  (2012) Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS One 7(3):e33279 Computational analysis , Omics
Bluemlein K, et al.  (2012) Pyruvate kinase is a dosage-dependent regulator of cellular amino acid homeostasis. Oncotarget 3(11):1356-69 Large-scale protein detection , Omics
Bogumil D, et al.  (2012) Chaperones divide yeast proteins into classes of expression level and evolutionary rate. Genome Biol Evol 4(5):618-25 Computational analysis , Omics
Borchani H, et al.  (2012) Markov blanket-based approach for learning multi-dimensional Bayesian network classifiers: an application to predict the European Quality of Life-5 Dimensions (EQ-5D) from the 39-item Parkinson's Disease Questionnaire (PDQ-39). J Biomed Inform 45(6):1175-84 Computational analysis , Omics
Bose T, et al.  (2012) Cohesin proteins promote ribosomal RNA production and protein translation in yeast and human cells. PLoS Genet 8(6):e1002749 Genomic expression study , Omics
Bowsher CG and Swain PS  (2012) Identifying sources of variation and the flow of information in biochemical networks. Proc Natl Acad Sci U S A 109(20):E1320-8 Computational analysis , Omics
Brandman O, et al.  (2012) A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress. Cell 151(5):1042-54 Omics
Brar GA, et al.  (2012) High-resolution view of the yeast meiotic program revealed by ribosome profiling. Science 335(6068):552-7 Genomic expression study , Omics , Other genomic analysis
Breidenbach MA, et al.  (2012) Mapping yeast N-glycosites with isotopically recoded glycans. Mol Cell Proteomics 11(6):M111.015339 Large-scale protein modification , Omics
Bresler M, et al.  (2012) Telescoper: de novo assembly of highly repetitive regions. Bioinformatics 28(18):i311-i317 Computational analysis , Omics
Brogaard K, et al.  (2012) A map of nucleosome positions in yeast at base-pair resolution. Nature 486(7404):496-501 Omics , Other genomic analysis
Brown JC and Madhani HD  (2012) Approaching the functional annotation of fungal virulence factors using cross-species genetic interaction profiling. PLoS Genet 8(12):e1003168 Omics
Brush GS, et al.  (2012) Yeast IME2 Functions Early in Meiosis Upstream of Cell Cycle-Regulated SBF and MBF Targets. PLoS One 7(2):e31575 Genomic expression study , Omics
Bryant JM, et al.  (2012) The linker histone plays a dual role during gametogenesis in Saccharomyces cerevisiae. Mol Cell Biol 32(14):2771-83 Genomic co-immunoprecipitation study , Omics
Bustard DE, et al.  (2012) During replication stress, non-SMC element 5 (NSE5) is required for Smc5/6 protein complex functionality at stalled forks. J Biol Chem 287(14):11374-83 Genomic co-immunoprecipitation study , Omics
Busti S, et al.  (2012) Overexpression of Far1, a cyclin-dependent kinase inhibitor, induces a large transcriptional reprogramming in which RNA synthesis senses Far1 in a Sfp1-mediated way. Biotechnol Adv 30(1):185-201 Genomic expression study , Omics
Cacace F, et al.  (2012) Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay. PLoS Comput Biol 8(11):e1002772 Computational analysis , Omics
Cao J, et al.  (2012) Modeling gene regulation networks using ordinary differential equations. Methods Mol Biol 802():185-97 Computational analysis , Omics
Cao K, et al.  (2012) Computational detection and analysis of sequences with duplex-derived interstrand G-quadruplex forming potential. Methods 57(1):3-10 Computational analysis , Omics
Carrillo E, et al.  (2012) Characterizing the roles of Met31 and Met32 in coordinating Met4-activated transcription in the absence of Met30. Mol Biol Cell 23(10):1928-42 Genomic co-immunoprecipitation study , Genomic expression study , Omics
Carter GW, et al.  (2012) Use of pleiotropy to model genetic interactions in a population. PLoS Genet 8(10):e1003010 Genomic expression study , Omics
Casamayor A, et al.  (2012) The role of the Snf1 kinase in the adaptive response of Saccharomyces cerevisiae to alkaline pH stress. Biochem J 444(1):39-49 Computational analysis , Genomic expression study , Omics
Casola C, et al.  (2012) Very low rate of gene conversion in the yeast genome. Mol Biol Evol 29(12):3817-26 Omics , Other genomic analysis
Caydasi AK, et al.  (2012) A dynamical model of the spindle position checkpoint. Mol Syst Biol 8():582 Computational analysis , Omics
Celton M, et al.  (2012) A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation. BMC Genomics 13(1):317 Genomic expression study , Omics