Genome-wide Analysis papers Help

Citation Topic(s)
Das R, et al.  (2012) Extracting gene-gene interactions through curve fitting. IEEE Trans Nanobioscience 11(4):402-9 Computational analysis , Omics
Davey HM, et al.  (2012) Genome-wide analysis of longevity in nutrient-deprived Saccharomyces cerevisiae reveals importance of recycling in maintaining cell viability. Environ Microbiol 14(5):1249-60 Large-scale phenotype analysis , Omics
Davidson MB, et al.  (2012) Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype. EMBO J 31(4):895-907 Comparative genomic hybridization , Omics
Daye ZJ, et al.  (2012) A Sparse Structured Shrinkage Estimator for Nonparametric Varying-Coefficient Model with an Application in Genomics. J Comput Graph Stat 21(1):110-133 Computational analysis , Omics
Daye ZJ, et al.  (2012) High-Dimensional Heteroscedastic Regression with an Application to eQTL Data Analysis. Biometrics 68(1):316-326 Computational analysis , Omics
De Battista H, et al.  (2012) Reaction rate reconstruction from biomass concentration measurement in bioreactors using modified second-order sliding mode algorithms. Bioprocess Biosyst Eng 35(9):1615-25 Computational analysis , Omics
De Piccoli G, et al.  (2012) Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases. Mol Cell 45(5):696-704 Genomic co-immunoprecipitation study , Omics
De RK and Tomar N  (2012) Modeling the optimal central carbon metabolic pathways under feedback inhibition using flux balance analysis. J Bioinform Comput Biol 10(6):1250019 Computational analysis , Omics
De la Fuente IM and Cortes JM  (2012) Quantitative analysis of the effective functional structure in yeast glycolysis. PLoS One 7(2):e30162 Computational analysis , Omics
Debacker K, et al.  (2012) Histone deacetylase complexes promote trinucleotide repeat expansions. PLoS Biol 10(2):e1001257 Large-scale phenotype analysis , Omics
Dephoure N and Gygi SP  (2012) Hyperplexing: a method for higher-order multiplexed quantitative proteomics provides a map of the dynamic response to rapamycin in yeast. Sci Signal 5(217):rs2 Large-scale protein detection , Omics
Dev BB, et al.  (2012) Detecting motifs and patterns at mobile genetic element insertion site. Bioinformation 8(16):777-86 Computational analysis , Omics
Di Rienzi SC, et al.  (2012) Maintaining replication origins in the face of genomic change. Genome Res 22(10):1940-52 Omics , Other genomic analysis
Diao L and Chen KC  (2012) Local ancestry corrects for population structure in Saccharomyces cerevisiae genome-wide association studies. Genetics 192(4):1503-11 Computational analysis , Omics
Dikicioglu D, et al.  (2012) Short- and long-term dynamic responses of the metabolic network and gene expression in yeast to a transient change in the nutrient environment. Mol Biosyst 8(6):1760-74 Computational analysis , Genomic expression study , Omics
Ding MZ, et al.  (2012) Proteomic research reveals the stress response and detoxification of yeast to combined inhibitors. PLoS One 7(8):e43474 Large-scale protein detection , Omics
Doherty KM, et al.  (2012) Loss of a 20S Proteasome Activator in Saccharomyces cerevisiae Downregulates Genes Important for Genomic Integrity, Increases DNA Damage, and Selectively Sensitizes Cells to Agents With Diverse Mechanisms of Action. G3 (Bethesda) 2(8):943-59 Genomic expression study , Omics
Dos Santos SC, et al.  (2012) Quantitative- and phospho-proteomic analysis of the yeast response to the tyrosine kinase inhibitor imatinib to pharmacoproteomics-guided drug line extension. OMICS 16(10):537-51 Omics , Other large-scale proteomic analysis
Douglas AC, et al.  (2012) Functional analysis with a barcoder yeast gene overexpression system. G3 (Bethesda) 2(10):1279-89 Large-scale genetic interaction , Large-scale phenotype analysis , Omics
Du Y, et al.  (2012) Expression profiling reveals an unexpected growth-stimulating effect of surplus iron on the yeast Saccharomyces cerevisiae. Mol Cells 34(2):127-32 Genomic expression study , Omics
Duenas-Sanchez R, et al.  (2012) Transcriptional regulation of fermentative and respiratory metabolism in Saccharomyces cerevisiae industrial bakers' strains. FEMS Yeast Res 12(6):625-36 Genomic expression study , Omics
Dumcke S, et al.  (2012) One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data. Nucleic Acids Res 40(18):8883-92 Computational analysis , Omics
Dunn B, et al.  (2012) Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments. Genome Res 22(5):908-24 Comparative genomic hybridization , Omics
Durand-Dubief M, et al.  (2012) SWI/SNF-Like Chromatin Remodeling Factor Fun30 Supports Point Centromere Function in S. cerevisiae. PLoS Genet 8(9):e1002974 Genomic co-immunoprecipitation study , Genomic expression study , Omics
Dymond J and Boeke J  (2012) The Saccharomyces cerevisiae SCRaMbLE system and genome minimization. Bioeng Bugs 3(3):168-71 Omics , Other genomic analysis
Egen D and Lun DS  (2012) Truncated branch and bound achieves efficient constraint-based genetic design. Bioinformatics 28(12):1619-23 Computational analysis , Omics
Ehrenreich IM, et al.  (2012) Genetic Architecture of Highly Complex Chemical Resistance Traits across Four Yeast Strains. PLoS Genet 8(3):e1002570 Large-scale phenotype analysis , Omics , Other genomic analysis
Feiglin A, et al.  (2012) Neighbor overlap is enriched in the yeast interaction network: analysis and implications. PLoS One 7(6):e39662 Computational analysis , Omics
Fernandez MA, et al.  (2012) Identification of a core set of signature cell cycle genes whose relative order of time to peak expression is conserved across species. Nucleic Acids Res 40(7):2823-32 Computational analysis , Omics
Ferreira RT, et al.  (2012) Arsenic stress elicits cytosolic Ca(2+) bursts and Crz1 activation in Saccharomyces cerevisiae. Microbiology 158(Pt 9):2293-302 Genomic expression study , Omics