References Associated with Literature Topic: Protein-Nucleic Acid Interactions Help

Liu J and Barrientos A  (2013) Transcriptional regulation of yeast oxidative phosphorylation hypoxic genes by oxidative stress. Antioxid Redox Signal 19(16):1916-27
Ansari SA, et al.  (2012) Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast. EMBO J 31(1):44-57
Armstrong AA, et al.  (2012) Recognition of SUMO-modified PCNA requires tandem receptor motifs in Srs2. Nature 483(7387):59-63
Aulds J, et al.  (2012) Global identification of new substrates for the yeast endoribonuclease, RNase mitochondrial RNA processing (MRP). J Biol Chem 287(44):37089-97
Babiano R, et al.  (2012) Saccharomyces cerevisiae ribosomal protein L26 is not essential for ribosome assembly and function. Mol Cell Biol 32(16):3228-41
Bartholomew CR, et al.  (2012) Ume6 transcription factor is part of a signaling cascade that regulates autophagy. Proc Natl Acad Sci U S A 109(28):11206-10
Bastos de Oliveira FM, et al.  (2012) Linking DNA replication checkpoint to MBF cell-cycle transcription reveals a distinct class of G1/S genes. EMBO J 31(7):1798-810
Blewett NH and Goldstrohm AC  (2012) A eukaryotic translation initiation factor 4E-binding protein promotes mRNA decapping and is required for PUF repression. Mol Cell Biol 32(20):4181-94
Blitzblau HG, et al.  (2012) Separation of DNA replication from the assembly of break-competent meiotic chromosomes. PLoS Genet 8(5):e1002643
Bradatsch B, et al.  (2012) Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel. Nat Struct Mol Biol 19(12):1234-41
Brickner DG, et al.  (2012) Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery. Dev Cell 22(6):1234-46
Brockmann C, et al.  (2012) Structural basis for polyadenosine-RNA binding by Nab2 Zn fingers and its function in mRNA nuclear export. Structure 20(6):1007-18
Bryant JM, et al.  (2012) The linker histone plays a dual role during gametogenesis in Saccharomyces cerevisiae. Mol Cell Biol 32(14):2771-83
Bussiere C, et al.  (2012) Integrity of the P-site is probed during maturation of the 60S ribosomal subunit. J Cell Biol 197(6):747-59
Bustard DE, et al.  (2012) During replication stress, non-SMC element 5 (NSE5) is required for Smc5/6 protein complex functionality at stalled forks. J Biol Chem 287(14):11374-83
Busygina V, et al.  (2012) Novel attributes of Hed1 affect dynamics and activity of the Rad51 presynaptic filament during meiotic recombination. J Biol Chem 287(2):1566-75
Cardillo SB, et al.  (2012) Interplay between the transcription factors acting on the GATA- and GABA-responsive elements of Saccharomyces cerevisiae UGA promoters. Microbiology 158(Pt 4):925-35
Carrillo E, et al.  (2012) Characterizing the roles of Met31 and Met32 in coordinating Met4-activated transcription in the absence of Met30. Mol Biol Cell 23(10):1928-42
Casolari JM, et al.  (2012) Widespread mRNA Association with Cytoskeletal Motor Proteins and Identification and Dynamics of Myosin-Associated mRNAs in S. cerevisiae. PLoS One 7(2):e31912
Cesarini E, et al.  (2012) H4K16 acetylation affects recombination and ncRNA transcription at rDNA in Saccharomyces cerevisiae. Mol Biol Cell 23(14):2770-81
Chang J and Vancura A  (2012) Analysis of SUC2 Promoter Structure by Nucleosome Scanning. Methods Mol Biol 809():321-33
Chang LC and Lee FJ  (2012) The RNA helicase Dhh1p cooperates with Rbp1p to promote porin mRNA decay via its non-conserved C-terminal domain. Nucleic Acids Res 40(3):1331-44
Charoensawan V, et al.  (2012) DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes. Mol Cell 47(2):183-92
Chaurasiya KR, et al.  (2012) A single zinc finger optimizes the DNA interactions of the nucleocapsid protein of the yeast retrotransposon Ty3. Nucleic Acids Res 40(2):751-60
Chavez MS, et al.  (2012) The conformational flexibility of the C-terminus of histone H4 promotes histone octamer and nucleosome stability and yeast viability. Epigenetics Chromatin 5(1):5
Chen W, et al.  (2012) iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties. PLoS One 7(10):e47843
Chiang S, et al.  (2012) Analysis of the association between transcription factor binding site variants and distinct accompanying regulatory motifs in yeast. Gene 491(2):237-45
Chowdhury A, et al.  (2012) Both Sm-domain and C-terminal extension of Lsm1 are important for the RNA-binding activity of the Lsm1-7-Pat1 complex. RNA 18(5):936-44
Cloud V, et al.  (2012) Rad51 is an accessory factor for Dmc1-mediated joint molecule formation during meiosis. Science 337(6099):1222-5
Cloutier SC, et al.  (2012) The DEAD-box RNA helicase Dbp2 connects RNA quality control with repression of aberrant transcription. J Biol Chem 287(31):26155-66