References Associated with Literature Topic: Other genomic analysis Help

Agier N and Fischer G  (2012) The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol 29(3):905-13
Aragon AD, et al.  (2012) Genomic analysis of Saccharomyces cerevisiae isolates that grow optimally with glucose as the sole carbon source. Electrophoresis 33(23):3514-20
Babrzadeh F, et al.  (2012) Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1. Mol Genet Genomics 287(6):485-94
Baller JA, et al.  (2012) A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon. Genome Res 22(4):704-13
Brar GA, et al.  (2012) High-resolution view of the yeast meiotic program revealed by ribosome profiling. Science 335(6068):552-7
Brogaard K, et al.  (2012) A map of nucleosome positions in yeast at base-pair resolution. Nature 486(7404):496-501
Casola C, et al.  (2012) Very low rate of gene conversion in the yeast genome. Mol Biol Evol 29(12):3817-26
Chen W, et al.  (2012) Prediction of replication origins by calculating DNA structural properties. FEBS Lett 586(6):934-8
Chen X and Burgoyne RD  (2012) Identification of common genetic modifiers of neurodegenerative diseases from an integrative analysis of diverse genetic screens in model organisms. BMC Genomics 13(1):71
Chen X, et al.  (2012) Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes. Science 335(6073):1235-8
Chin BL, et al.  (2012) Genetic variation in Saccharomyces cerevisiae: circuit diversification in a signal transduction network. Genetics 192(4):1523-32
Connelly CF and Akey JM  (2012) On the prospects of whole-genome association mapping in Saccharomyces cerevisiae. Genetics 191(4):1345-53
Cui F, et al.  (2012) Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing. Nucleic Acids Res 40(21):10753-64
Dai Z and Dai X  (2012) Antisense transcription is coupled to nucleosome occupancy in sense promoters. Bioinformatics 28(21):2719-23
Di Rienzi SC, et al.  (2012) Maintaining replication origins in the face of genomic change. Genome Res 22(10):1940-52
Dymond J and Boeke J  (2012) The Saccharomyces cerevisiae SCRaMbLE system and genome minimization. Bioeng Bugs 3(3):168-71
Ehrenreich IM, et al.  (2012) Genetic Architecture of Highly Complex Chemical Resistance Traits across Four Yeast Strains. PLoS Genet 8(3):e1002570
Frost A, et al.  (2012) Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions. Cell 149(6):1339-52
Garcia-Martinez J, et al.  (2012) The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast. Transcription 3(1):39-44
Gossett AJ and Lieb JD  (2012) In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae. PLoS Genet 8(6):e1002771
Hendrickx DM, et al.  (2012) Global test for metabolic pathway differences between conditions. Anal Chim Acta 719():8-15
Huebert DJ and Gasch AP  (2012) Defining flexible vs. inherent promoter architectures: the importance of dynamics and environmental considerations. Nucleus 3(5):399-403
Huebert DJ, et al.  (2012) Dynamic changes in nucleosome occupancy are not predictive of gene expression dynamics but are linked to transcription and chromatin regulators. Mol Cell Biol 32(9):1645-53
Hughes AL, et al.  (2012) A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern. Mol Cell 48(1):5-15
Iben JR and Maraia RJ  (2012) tRNAomics: tRNA gene copy number variation and codon use provide bioinformatic evidence of a new anticodon:codon wobble pair in a eukaryote. RNA 18(7):1358-72
Itzhaki Z and Margalit H  (2012) Reduced polymorphism in domains involved in protein-protein interactions. PLoS One 7(4):e34503
Knott SR, et al.  (2012) Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae. Cell 148(1-2):99-111
Kunicka-Styczynska A and Rajkowska K  (2012) Phenotypic and genotypic diversity of wine yeasts used for acidic musts. World J Microbiol Biotechnol 28(5):1929-1940
Kvas S, et al.  (2012) Loss of nonsense mediated decay suppresses mutations in Saccharomyces cerevisiae TRA1. BMC Genet 13(1):19
Levy SF, et al.  (2012) Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant. PLoS Biol 10(5):e1001325