References Associated with Literature Topic: DNA/RNA Sequence Features

Cordente AG, et al.  (2013) Novel wine yeast with mutations in YAP1 that produce less acetic acid during fermentation. FEMS Yeast Res 13(1):62-73
Granek JA, et al.  (2013) The Genetic Architecture of Biofilm Formation in a Clinical Isolate of Saccharomyces cerevisiae. Genetics 193(2):587-600
Kemp AJ, et al.  (2013) A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation. Mol Microbiol 87(2):284-300
Liu J and Barrientos A  (2013) Transcriptional regulation of yeast oxidative phosphorylation hypoxic genes by oxidative stress. Antioxid Redox Signal 19(16):1916-27
Matushkin YG, et al.  (2013) Translation efficiency in yeasts correlates with nucleosome formation in promoters. J Biomol Struct Dyn 31(1):96-102
Naumov GI, et al.  (2013) Molecular genetic diversity of the Saccharomyces yeasts in Taiwan: Saccharomyces arboricola, Saccharomyces cerevisiae and Saccharomyces kudriavzevii. Antonie Van Leeuwenhoek 103(1):217-28
Abate G, et al.  (2012) Snf1/AMPK regulates Gcn5 occupancy, H3 acetylation and chromatin remodelling at S. cerevisiae ADY2 promoter. Biochim Biophys Acta 1819(5):419-27
Bartholomew CR, et al.  (2012) Ume6 transcription factor is part of a signaling cascade that regulates autophagy. Proc Natl Acad Sci U S A 109(28):11206-10
Blount BA, et al.  (2012) Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS One 7(3):e33279
Bosch D and Saiardi A  (2012) Arginine transcriptional response does not require inositol phosphate synthesis. J Biol Chem 287(45):38347-55
Boveri S, et al.  (2012) Method for the validation of intraspecific crosses of Saccharomyces cerevisiae strains by minisatellite analysis. Can J Microbiol 58(3):350-8
Bustard DE, et al.  (2012) During replication stress, non-SMC element 5 (NSE5) is required for Smc5/6 protein complex functionality at stalled forks. J Biol Chem 287(14):11374-83
Cardo L, et al.  (2012) Single molecule FRET characterization of large ribozyme folding. Methods Mol Biol 848():227-51
Cardona F, et al.  (2012) Phylogenetic origin and transcriptional regulation at the post-diauxic phase of SPI1, in Saccharomyces cerevisiae. Cell Mol Biol Lett 17(3):393-407
Catala M, et al.  (2012) RNA-dependent regulation of the cell wall stress response. Nucleic Acids Res 40(15):7507-17
Chan CT, et al.  (2012) Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins. Nat Commun 3():937
Chang DT, et al.  (2012) A study on promoter characteristics of head-to-head genes in Saccharomyces cerevisiae. BMC Genomics 13 Suppl 1():S11
Chen W, et al.  (2012) iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties. PLoS One 7(10):e47843
Chen X, et al.  (2012) Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes. Science 335(6073):1235-8
Chin BL, et al.  (2012) Genetic variation in Saccharomyces cerevisiae: circuit diversification in a signal transduction network. Genetics 192(4):1523-32
Coltri PP and Oliveira CC  (2012) Cwc24p Is a General Saccharomyces cerevisiae Splicing Factor Required for the Stable U2 snRNP Binding to Primary Transcripts. PLoS One 7(9):e45678
Correll SJ, et al.  (2012) Short nucleosome repeats impose rotational modulations on chromatin fibre folding. EMBO J 31(10):2416-26
Dev BB, et al.  (2012) Detecting motifs and patterns at mobile genetic element insertion site. Bioinformation 8(16):777-86
Di Rienzi SC, et al.  (2012) Maintaining replication origins in the face of genomic change. Genome Res 22(10):1940-52
Engle EK and Fay JC  (2012) Divergence of the Yeast Transcription Factor FZF1 Affects Sulfite Resistance. PLoS Genet 8(6):e1002763
Finnigan GC, et al.  (2012) Evolution of increased complexity in a molecular machine. Nature 481(7381):360-4
Fundakowski J, et al.  (2012) Localization of a Subset of Yeast mRNAs Depends on Inheritance of Endoplasmic Reticulum. Traffic 13(12):1642-52
Gebre S, et al.  (2012) Osh6 overexpression extends the lifespan of yeast by increasing vacuole fusion. Cell Cycle 11(11):2176-88
Grogan D and Jinks-Robertson S  (2012) Formaldehyde-induced mutagenesis in Saccharomyces cerevisiae: molecular properties and the roles of repair and bypass systems. Mutat Res 731(1-2):92-8
Gudipati RK, et al.  (2012) The yeast RPL9B gene is regulated by modulation between two modes of transcription termination. EMBO J 31(10):2427-37