ASP3-4 / YLR160C

Locus Overview

Standard Name
ASP3-4
Systematic Name
YLR160C
SGD ID
S000004150
Aliases
ASP3
Feature Type
ORF , Verified
Description
Cell-wall L-asparaginase II involved in asparagine catabolism; expression induced during nitrogen starvation; ORF contains a short non-coding RNA that enhances expression of full-length gene; likely arose in via horizontal gene transfer from the wine yeast Wickerhamomyces anomalus or a close relative; reference strain S288C has four copies of ASP3; ASP3-4 has a paralog, ASP3-2, that arose from a segmental duplication 1 2 3 4 5
Name Description
ASParaginase
Paralog
ASP3-2 6
Sequence Details

Sequence

The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.

Location

Depicts genomic context; mouse over to view names, coordinates, and brief descriptions. Use the links to GBrowse and ORF Map for an interactive view of this region.

View in: GBrowse | ORF Map

Subfeatures

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Feature Feature Systematic Name Feature Type Relative Coordinates Coordinates Strand Coord. Version Seq. Version

Analyze Sequence

Protein Details

Protein

Basic information about the protein. Click "Protein Details" for further information about the protein such as abundance data, domains, shared domains with other proteins, protein sequence retrieval for various strains, sequence-based physico-chemical proterties, protein modification sites sites, and external identifiers for the protein.

Length (a.a.)
362
Mol. Weight (Da)
38672.8
Isoelectric Point
4.44
Gene Ontology Details

Gene Ontology

GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.

View computational annotations

Molecular Function

Manually Curated

Cellular Component

Manually Curated

Pathways

Phenotype Details

Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.

Large-scale Survey

overexpression
Interaction Details

Interaction

Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.

17 total interactions for 17 unique genes

Physical Interactions

  • Affinity Capture-RNA: 1
  • PCA: 1

Genetic Interactions

  • Negative Genetic: 12
  • Phenotypic Suppression: 1
  • Positive Genetic: 2
Regulation Details

Regulation

The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.

Regulators
5
Targets
0
Expression Details

Expression

Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.

Summary Paragraph

A summary of the locus, written by SGD Biocurators following a thorough review of the literature. Links to gene names and curated GO terms are included within the Summary Paragraphs.

Last Updated: 1999-09-01

Literature Details

Literature

All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.

Primary
16
Additional
20
Reviews
2

History

A catalog of any nomenclature and/or sequence changes, or other notes related to the annotation of the feature.

No history data available.

References

List of references used specifically on this page as citations for information in the Overview (e.g. gene names, aliases, Descriptions), Summary Paragraph, or History sections. The complete list of curated references associated with this locus can be found by clicking on the "Literature" tab for this locus.

    Resources