TRT2 / tT(CGU)K

Protein Help

Protein Overview

Protein abundance data, domains, shared domains with other proteins, protein sequence retrieval for various strains, sequence-based physico-chemical proterties, phosphorylation sites, and external identifiers for the protein.


Feature Type
tRNA_gene
Description
Threonine tRNA (tRNA-Thr), predicted by tRNAscan-SE analysis; correct folding and efficient aminoacylation require Lhp1p 1 2

Experimental Data


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Gene Experiment Result Reference

Domains and Classification

Collection of computationally identified domains and motifs, as determined by InterProScan analysis; includes protein coordinates for the domain, a domain Description, a Source and corresponding accession ID, and the number of S. cerevisiae genes that share the same domain.


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Gene Protein Coordinates Accession ID Description Source No. of Genes
with Domain

Domain Locations

Visual representation of the locations of the domains within the protein, as listed in the Domains and Classification table. Each row displays the domain(s) derived from a different Source, with domains color-coded according to this Source.

Scroll over a domain to view its exact coordinates and its Description.

Shared Domains

This diagram displays domains (colored squares) shared between the given protein (yellow circle) and other proteins (gray circles); the domains are color-coded according to their source, as displayed in the Domain Locations table, above.

Reset

Click on a gene or domain name to go to its specific page within SGD; drag any of the gene or domain objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram.

Sequence

Protein sequence for the given gene in S288C and other strains, when available. Use the pull-down menu under "Strain" to select the sequence for a specific strain. The displayed sequence can be downloaded as a .txt file. Amino acids displayed in blue represent modification sites, as curated by PhosphoGRID or SGD. More detailed evidence for these modification sites is presented in the Post-translational Modifications table, located just below the protein sequence.


* Blue amino acids indicate modification sites. More information below.

Post-translational Modifications -

Modification sites for the protein in the selected strain, based on the presence of a residue in the specific strain, as inferred from experimental evidence, as curated by PhosphoGRID or SGD.

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Gene Site Site Functions Modification Modifier Source Reference

Sequence-Based Physico-chemical Properties - S288C

Calculated protein properties, including amino acid composition, length, coding region calculations, and atomic composition.

Amino Acid Composition

Sort table using the arrow to the right of a column header to sort by that column; download all properties as a .txt file using the "Download Properties" button.

Amino Acid Frequency Percentage

Physical Details

Length (a.a):
Molecular Weight (Da):
Isoelectric Point (pl):
Formula:
Aliphatic Index:
Instability Index:

Coding Region Translation Calculations

Codon Bias:
Codon Adaptation Index:
Frequence of Optimal Codons:
Hydropathicity of Protein:
Aromaticity Score:

Extinction Coefficients at 280nm

ALL Cys residues appear as half cystines:
NO Cys residues appear as half cystines:

Atomic Composition

Sort table using the arrow to the right of a column header to sort by that column; download all properties as a .txt file using the "Download Properties" button.

Atom Frequency Percentage

External Identifiers

List of external identifiers for the protein from various database sources.


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External ID Source

Resources


Homologs

Protein Databases/Other

Localization

Post-translational Modifications

PhosphoGRID