SGD Help: Video Tutorials
This page includes all of the video tutorials produced by SGD.
Contents
General SGD Use Tutorials
| Website features | SGD has a new look and great new features! |
SGD has a new look and great new features!
View two of our brand new features: 1) enhanced Quick Search and 2) simplified menu bar
(1 minute, 30 seconds)
View We've added more than just a new look... on Vimeo
YeastMine Tutorials
Template Basics
This brief video illustrates what a "Template" is and how to find and use them.
(58 seconds)
View YeastMine: Templates on Vimeo
Editing Templates, Part 1
This brief video illustrates how to edit an existing template, focusing on adding and deleting datatypes from a template.
(2 minutes, 37 seconds)
View Yeast Mine: Editing templates, Part 1 on Vimeo
Editing Templates, Part 2
More on editing YeastMine templates, focusing on adding and changing constraints in existing templates. Includes instructions on limiting a query to a specified gene list.
(2 minutes, 45 seconds)
View Yeast Mine: Editing Templates, Part 2 on Vimeo
Creating/Using Lists
This brief video illustrates how to create lists of genes.
(2 minutes)
View YeastMine: Creating and Using Lists on Vimeo
Saving Search Results as a List
Describes how to save some or all of the search results from a YeastMine query into a list.
(1 minute, 57 seconds)
View YeastMine: Saving Search Results in a List on Vimeo
Feeding a List into a Template
This brief video illustrates how to run a template search on a list of genes and shows you where to find some of the widgets and template search analyses automatically performed by YeastMine whenever you create a list of genes.
(1 minute, 51 seconds)
View YeastMine: Using Lists in a Template on Vimeo
List Operations
List operations (union, intersect, and subtract) allow you to combine results from previous YeastMine queries and thus provide a powerful way to build complex queries.
(2 minutes, 3 seconds)
View YeastMine: List Operations on Vimeo
Adding Objects to a Saved List
This video illustrates how to add selected objects, such as genes, from the results of a query or from a Saved List to another Saved List in YeastMine.
(2 minutes, 23 seconds)
View YeastMine: Adding Objects to a Saved List on Vimeo
MyMine (1) - Save Lists/Queries
This brief video illustrates how to set up a MyMine account and use it to save your personal Lists and Queries for future use.
(2 minutes, 42 seconds)
View YeastMine: Using MyMine, Part 1 on Vimeo
MyMine (2) - Create/Save Templates
This brief video illustrates how to save your personal Templates for the future using MyMine.
(1 minute, 57 seconds)
View YeastMine: Using MyMine, Part 2 on Vimeo
Widgets: GO Term Enrichment
This tutorial demonstrates how to use YeastMine to obtain a GO Term Enrichment analysis for a gene list.
(2 minutes, 20 seconds)
View YeastMine: GO Term Enrichment on Vimeo
YeastMine: 8 Cool Things You Can Do with YeastMine
An overview of YeastMine's major features. For more detailed information on any one of these features, please see separate tutorials offered on these topics, found on this page.
(3 minutes, 21 seconds)
View YeastMine: Overview - 8 Cool Things You Can Do with YeastMine! on Vimeo
YeastMine is Awesome!
A quick sampling of 3 cool features in YeastMine.
(1 minute, 4 seconds)
View YeastMine is Awesome! on Vimeo
GBrowse Tutorials
| General Navigation | GBrowse Navigation Basics Downloading GBrowse Data at SGD |
| Tracks | Selecting and Viewing Tracks in GBrowse |
GBrowse Navigation Basics
This video illustrates basic navigation concepts for using GBrowse.
(1 minute, 42 seconds)
View GBrowse navigation basics tutorial on Vimeo
Selecting and Viewing Tracks in GBrowse
A video tutorial on selecting, viewing and manipulating data tracks in SGD's GBrowse.
(1 minute, 32 seconds)
View Selecting and viewing data tracks in GBrowse on Vimeo
Downloading GBrowse Data at SGD
A video tutorial on downloading GBrowse data in SGD.
(2 min, 38 seconds)
View Downloading GBrowse data at SGD on Vimeo
SPELL Tutorials
| General Navigation | SPELL at SGD |
SPELL at SGD
Describes how to use SPELL (Serial Pattern of Expression Levels Locator), a query-driven search engine for large gene expression microarray compendia. Users will learn how to perform a search using a set of genes, download data, and show expression levels for a single gene.
(2 minutes, 3 seconds)
View SPELL at SGD on Vimeo
Pathway Tutorials
| General Navigation | How to Access YeastCyc YeastCyc: The Cellular Overview |
How to Access YeastCyc
A brief tutorial on YeastCyc, a database of manually curated biochemical pathways in Saccharomyces cerevisiae. In this tutorial you will learn different ways of accessing YeastCyc from SGD.
(2 minutes, 22 seconds)
View How to Access YeastCyc on Vimeo
YeastCyc: The Cellular Overview
A brief tutorial on YeastCyc, a database of biochemical pathways in Saccharomyces cerevisiae. In this tutorial you will learn about the cellular overview and several of its key features.
View YeastCyc: The Cellular Overview on Vimeo
Go to YeastMine
Go to GBrowse
Go to SPELL
Go to YeastCyc