This page displays data from Segal et al and was kindly provided to SGD by Eran Segal.

Module 42 (53 Genes) - Stress Analysis
Jump to: Significant GO annotations | Significant Motif Binding Sites.
Predicted Regulatory Module
The control program is a set of gene products predicted to regulate the cluster of genes below. The prediction is based on the relationship between the expression of the regulator and the expression of genes in the cluster as described in Segal et al. In several instances, there is direct experimental evidence to corroborate the predicted function of the regulators. In this view, the regulators (circled gene products) are in a hierarchy according to their effects on gene expression in the experiments directly below them.


Jump to: Predicted Control Program | Significant Motif Binding Sites.
 
Significant GO Annotations
This table lists, in order of significance, all GO annotations enriched in this cluster at a pvalue below 0.01. For each significant GO annotation, this table displays the following statistics: the number of genes in the cluster with the annotation (Hits), the percentage of genes in the cluster with the annotation (Hits (%)), the total number of genes in the entire dataset with the annotation (Total) and the pvalue of the annotation enrichment.
GO Term Ontology Hits Hits (%) Total Pvalue
transcription regulator activity Molecular Function 33 62.26 227 1.13205e-21
nucleus Cellular Component 32 60.37 400 6.65065e-13
regulation of transcription\, DNA-dependent Biological Process 23 43.39 189 1.17526e-12
regulation of transcription from Pol II promoter Biological Process 18 33.96 140 2.85919e-10
response to pheromone Biological Process 17 32.07 148 6.04962e-09
sensory perception Biological Process 17 32.07 149 6.71735e-09
chemosensory perception Biological Process 17 32.07 150 7.45232e-09
perception of external stimulus Biological Process 17 32.07 151 8.26066e-09
perception of chemical substance Biological Process 17 32.07 151 8.26066e-09
perception of abiotic stimulus Biological Process 17 32.07 152 9.14897e-09
transcriptional activator activity Molecular Function 8 15.09 27 5.86614e-08
endomembrane system Cellular Component 24 45.28 361 1.1914e-07
regulation of transcription by pheromones Biological Process 12 22.64 84 1.40349e-07
response to abiotic stimulus Biological Process 18 33.96 218 3.55927e-07
response to external stimulus Biological Process 18 33.96 228 6.98575e-07
transcription Biological Process 15 28.30 178 3.36391e-06
RNA polymerase II transcription factor activity Molecular Function 9 16.98 70 1.47917e-05
regulation of transcription from Pol II promoter by pheromones Biological Process 7 13.20 44 3.57525e-05
physiological processes Biological Process 48 90.56 1589 5.70614e-05
cell Cellular Component 40 75.47 1181 8.75288e-05
transcription from Pol II promoter Biological Process 8 15.09 69 9.66107e-05
transcription\, DNA-dependent Biological Process 12 22.64 161 0.000124031
transcription cofactor activity Molecular Function 5 9.43 24 0.000136894
nucleoplasm Cellular Component 8 15.09 75 0.00017299
metabolism Biological Process 38 71.69 1130 0.000231656
membrane Cellular Component 27 50.94 687 0.000392566
specific RNA polymerase II transcription factor activity Molecular Function 5 9.43 37 0.00107043
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism Biological Process 17 32.07 366 0.0011957
transcription factor activity Molecular Function 6 11.32 62 0.00190685
nucleosome remodeling complex Cellular Component 3 5.66 12 0.00195308
DNA binding activity Molecular Function 7 13.20 85 0.00200478
transcriptional repressor activity Molecular Function 3 5.66 13 0.00248482
chromatin modeling Biological Process 5 9.43 45 0.00253717
negative regulation of transcription from Pol II promoter Biological Process 3 5.66 17 0.00541907


Jump to: Predicted Control Program | Significant GO Annotations.
 
Significant Motif Binding Sites
This table lists, in order of significance, all motif binding sites enriched in this cluster at a pvalue below 0.01. For each significant motif binding site, the following statistics are displayed: the number of genes in the cluster with the binding site in their promoter (Hits), the percentage of genes with the binding site in their promoter (Hits (%)), the total number of genes in the dataset with the binding site in their promoter (Total) and the pvalue of the binding site enrichment. To view the sequence logo for each motif, click on the motif name.
Motif Source Consensus Hits Hits (%) Total Pvalue