This page displays data from Segal et al. and was kindly provided to SGD by Eran Segal.

Module 6 (98 Genes) - Cell Cycle Analysis

Jump to: Significant GO annotations | Significant Motif Binding Sites.

Predicted Regulatory Module

The control program is a set of gene products predicted to regulate the cluster of genes below. The prediction is based on the relationship between the expression of the regulator and the expression of genes in the cluster as described in Segal et al. In several instances, there is direct experimental evidence to corroborate the predicted function of the regulators. In this view, the regulators (circled gene products) are in a hierarchy according to their effects on gene expression in the experiments directly below them.

Jump to: Predicted Control Program | Significant Motif Binding Sites.

Significant GO Annotations
This table lists, in order of significance, all GO annotations enriched in this cluster at a pvalue below 0.01. For each significant GO annotation, this table displays the following statistics: the number of genes in the cluster with the annotation (Hits), the percentage of genes in the cluster with the annotation (Hits (%)), the total number of genes in the entire dataset with the annotation (Total) and the pvalue of the annotation enrichment.
GO Term	Ontology	Hits	Hits (%)	Total	Pvalue
mannosyltransferase activity	Molecular Function	4	4.08	5	0.000211635
molecular_function unknown	Molecular Function	49	50	405	0.000379735
DNA recombination	Biological Process	6	6.12	14	0.000457866
DNA transposition	Biological Process	3	3.06	3	0.000566874
transferase activity\, transferring glycosyl groups	Molecular Function	6	6.12	15	0.000702535
glycoprotein biosynthesis	Biological Process	4	4.08	7	0.0012525
spindle pole body duplication (sensu Fungi)	Biological Process	3	3.06	4	0.00208338
O-linked glycosylation	Biological Process	3	3.06	4	0.00208338
spindle pole body duplication (sensu Saccharomyces)	Biological Process	3	3.06	4	0.00208338
M-phase specific microtubule process	Biological Process	3	3.06	4	0.00208338
spindle pole body and microtubule cycle (sensu Fungi)	Biological Process	3	3.06	4	0.00208338
organelle organization and biogenesis	Biological Process	8	8.16	33	0.00330003
spindle pole	Cellular Component	4	4.08	9	0.003811
cytoplasm organization and biogenesis	Biological Process	8	8.16	34	0.00397474
microtubule-based process	Biological Process	6	6.12	22	0.00585783
protein amino acid glycosylation	Biological Process	4	4.08	11	0.00843356
transferase activity\, transferring hexosyl groups	Molecular Function	4	4.08	11	0.00843356
reproduction	Biological Process	3	3.06	6	0.00879196
conjugation	Biological Process	3	3.06	6	0.00879196
sexual reproduction	Biological Process	3	3.06	6	0.00879196

Jump to: Predicted Control Program | Significant GO Annotations.

Significant Motif Binding Sites
This table lists, in order of significance, all motif binding sites enriched in this cluster at a pvalue below 0.01. For each significant motif binding site, the following statistics are displayed: the number of genes in the cluster with the binding site in their promoter (Hits), the percentage of genes with the binding site in their promoter (Hits (%)), the total number of genes in the dataset with the binding site in their promoter (Total) and the pvalue of the binding site enrichment. To view the sequence logo for each motif, click on the motif name.
Motif	Source	Consensus	Hits	Hits (%)	Total	Pvalue
STUAP_01	TRANSFAC	CATCGCGTCC	66	67.34	266	3.59618e-17