This page displays data from Segal et al. and was kindly provided to SGD by Eran Segal.

Module 11 (37 Genes) - Cell Cycle Analysis
Jump to: Significant GO annotations | Significant Motif Binding Sites.
Predicted Regulatory Module
The control program is a set of gene products predicted to regulate the cluster of genes below. The prediction is based on the relationship between the expression of the regulator and the expression of genes in the cluster as described in Segal et al. In several instances, there is direct experimental evidence to corroborate the predicted function of the regulators. In this view, the regulators (circled gene products) are in a hierarchy according to their effects on gene expression in the experiments directly below them.


Jump to: Predicted Control Program | Significant Motif Binding Sites.
 
Significant GO Annotations
This table lists, in order of significance, all GO annotations enriched in this cluster at a pvalue below 0.01. For each significant GO annotation, this table displays the following statistics: the number of genes in the cluster with the annotation (Hits), the percentage of genes in the cluster with the annotation (Hits (%)), the total number of genes in the entire dataset with the annotation (Total) and the pvalue of the annotation enrichment.
GO Term Ontology Hits Hits (%) Total Pvalue
cytoskeleton Cellular Component 6 16.21 27 0.000108917
sphingolipid biosynthesis Biological Process 3 8.10 5 0.000273001
sphingolipid metabolism Biological Process 4 10.81 14 0.000631927
carbohydrate biosynthesis Biological Process 3 8.10 8 0.00139904
polysaccharide biosynthesis Biological Process 3 8.10 8 0.00139904
sphingomyelin metabolism Biological Process 3 8.10 8 0.00139904
membrane lipid metabolism Biological Process 4 10.81 19 0.00211729
lipid metabolism Biological Process 5 13.51 32 0.00224034
cell cortex Cellular Component 3 8.10 10 0.00282543
polysaccharide metabolism Biological Process 3 8.10 10 0.00282543
plasma membrane Cellular Component 9 24.32 107 0.00328211
actin cytoskeleton Cellular Component 3 8.10 11 0.00377139
protein amino acid glycosylation Biological Process 3 8.10 11 0.00377139
spindle Cellular Component 3 8.10 12 0.00488138
intracellular Cellular Component 14 37.83 237 0.0058675
mitotic spindle positioning and orientation Biological Process 3 8.10 13 0.00615996
mitotic spindle positioning and orientation (sensu Fungi) Biological Process 3 8.10 13 0.00615996
mitotic spindle assembly (sensu Saccharomyces) Biological Process 3 8.10 13 0.00615996
mitotic spindle assembly (sensu Fungi) Biological Process 3 8.10 13 0.00615996
shmoo tip Cellular Component 5 13.51 41 0.00644815
carbohydrate metabolism Biological Process 4 10.81 26 0.00666198
plasmodesma Cellular Component 4 10.81 27 0.00759559
spindle pole body Cellular Component 4 10.81 27 0.00759559
intercellular junction Cellular Component 4 10.81 27 0.00759559
apicolateral plasma membrane Cellular Component 4 10.81 27 0.00759559
cell junction Cellular Component 4 10.81 27 0.00759559
plasmodesmatal desmotubule Cellular Component 4 10.81 27 0.00759559
cell Cellular Component 27 72.97 633 0.00809705
microtubule organizing center Cellular Component 4 10.81 28 0.00860634
endoplasmic reticulum Cellular Component 4 10.81 28 0.00860634
cytoplasm Cellular Component 12 32.43 200 0.00970288


Jump to: Predicted Control Program | Significant GO Annotations.
 
Significant Motif Binding Sites
This table lists, in order of significance, all motif binding sites enriched in this cluster at a pvalue below 0.01. For each significant motif binding site, the following statistics are displayed: the number of genes in the cluster with the binding site in their promoter (Hits), the percentage of genes with the binding site in their promoter (Hits (%)), the total number of genes in the dataset with the binding site in their promoter (Total) and the pvalue of the binding site enrichment. To view the sequence logo for each motif, click on the motif name.
Motif Source Consensus Hits Hits (%) Total Pvalue
STUAP_01 TRANSFAC CATCGCGTCC 22 59.45 310 4.26725e-05