Unpublished Data

Codon tables

Contains codon usage tables for a variety of organisms and organelles including S. cerevisiae. These tables were calculated using the GCG program CodonFrequency.

	Name	Description	README
	codon/	Contains codon usage tables for a variety of organisms/organelles, based on the coding regions identified for the respective organism or organelle contained within GenBank, version 67.0.

Genetic footprinting

Contains the results of a genetic footprinting study performed by Barbara Dunn in 2004, where the relative fitness of strains with random insertion mutations were compared.

	Name	Description	README
	genetic_footprinting/	Contains phenotypic fitness results for strains with individually mutagenized ORFs grown under several conditions, with probability cutoffs for mutations causing varying levels of growth defects and raw ratio scores

S. cerevisiae vs S. cerevisiae 1999

Contains the results of an all by all comparison of ORF DNA and protein sequences on a Timelogics DeCypher machine using the Smith-Waterman algorithm, performed in 1999.

	Name	Description	README
	Scerevisiae_vs_Scerevisiae_1999/	Contains the results of an all by all comparison of ORF DNA and ORF protein sequences with one tab-delimited file per chromosome.

Vector DB

Contains sequences of plasmid vectors that were collected in VectorDB, a resource that was created by Stephen Misener. It was last updated in 1997 and has been retired.

	Name	Description	README
	vectordb/	Contains genbank files with the sequence of the relevant plasmid vectors collected in VectorDB

Copyright © 1997-2012 The Board of Trustees of Leland Stanford Junior University.

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The SGD project at Stanford University is supported by a Genome Research Resource Grant from the US National Human Genome Research Institute, part of the US National Institutes of Health.