Genomics
Alignment
Contains the results of comparisons between S. cerevisiae nucleotide and protein sequences and those from other Saccharomyces sensu stricto species.
| Name | Description | README | |
|---|---|---|---|
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MIT_Spar_Sbay_Smik_Scer/ | This directory contains multiple nucleotide sequence alignments between S. cerevisiae ORFs and those from S. paradoxus, S. bayanus, and S. mikatae. These alignments were provided by Manolis Kellis, Eric Lander, and Bruce Birren of the Whitehead Institute in 2003. | ![[TXT]](http://www.yeastgenome.org/wp-content/uploads/2011/08/readme-icon.gif){kind=icon} |
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MIT_WashU_SGD_2004/ | This directory contains information correlating S. cerevisiae protein sequences with similar ORFs from Saccharomyces sensu stricto and sensu lato species, as determined by either the Fungal Genome Initiative (MIT) or the Washington University (WashU) sequencing projects. | |
Homology
Contains the results of comparisons between S. cerevisiae sequences and entries in other databases.
| Name | Description | README | |
|---|---|---|---|
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pdb_homologs/ | This directory contains the results of Smith-Waterman analysis comparing S. cerevisiae protein sequences to entries in the RCSB Protein Data Bank (PDB). Files available include the current comparison and an archive of previous files. | |
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psi_blast/ | This directory contains the results of PSI-BLAST analysis comparing S. cerevisiae protein sequences to protein sequences in GenBank. This analysis is no longer performed regularly. Files available include the most recent comparison and an archive of previous files. | |
