Expression

Microarray

Data files from microarray experiments used to populate SPELL
(Serial Pattern of Expression Levels Locator). These files are mostly in
PCL format and are not regularly updated.

	Name	Description	README
	Abbott_2008_PMID_18676708	Physiological and transcriptional responses to high concentrations of lactic acid in anaerobic chemostat cultures of Saccharomyces cerevisiae.
	Agarwal_2008_PMID_18156292	Role of heme in the antifungal activity of the azaoxoaporphine alkaloid sampangine.
	Aguilera_2005_PMID_15780657	Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations.
	Alper_2006_PMID_17158319	Engineering yeast transcription machinery for improved ethanol tolerance and production.
	Anderson_2006_PMID_16896209	Antagonism between two mechanisms of antifungal drug resistance.
	Anderson_2009_PMID_19273689	Gene expression and evolution of antifungal drug resistance.
	Angell_2006_PMID_17185230	Pyocyanin isolated from a marine microbial population: synergistic production between two distinct bacterial species and mode of action.
	Angus-Hill_2001_PMID_11336698	A Rsc3/Rsc30 zinc cluster dimer reveals novel roles for the chromatin remodeler RSC in gene expression and cell cycle control.
	Aragon_2006_PMID_16507144	Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress.
	Aragon_2008_PMID_18199684	Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures.
	Auld_2006_PMID_16543154	Genomic association of the proteasome demonstrates overlapping gene regulatory activity with transcription factor substrates.
	Azzouz_2009_PMID_19155328	Specific roles for the Ccr4-Not complex subunits in expression of the genome.
	Backhus_2001_PMID_12702356	Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions.
	Baerends_2008_PMID_18378663	Engineering and analysis of a Saccharomyces cerevisiae strain that uses formaldehyde as an auxiliary substrate.
	Baetz_2001_PMID_11533240	Transcriptional coregulation by the cell integrity mitogen-activated protein kinase Slt2 and the cell cycle regulator Swi4.
	Barbara_2007_PMID_17124610	The transcription factor Gcr1 stimulates cell growth by participating in nutrient-responsive gene expression on a global level.
	Bedalov_2001_PMID_11752457	Identification of a small molecule inhibitor of Sir2p.
	Belli_2004_PMID_14722110	Saccharomyces cerevisiae glutaredoxin 5-deficient cells subjected to continuous oxidizing conditions are affected in the expression of specific sets of genes.
	Benton_2006_PMID_17140446	Analyzing the dose-dependence of the Saccharomyces cerevisiae global transcriptional response to methyl methanesulfonate and ionizing radiation.
	Bernstein_2000_PMID_11095743	Genomewide studies of histone deacetylase function in yeast.
	Berry_2008_PMID_18753408	Stress-activated genomic expression changes serve a preparative role for impending stress in yeast.
	Boer_2005_PMID_15949974	Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures.
	Boer_2007_PMID_17419774	Transcriptional responses of Saccharomyces cerevisiae to preferred and nonpreferred nitrogen sources in glucose-limited chemostat cultures.
	Borde_2009_PMID_19078966	Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites.
	Bradley_2009_PMID_19180179	Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae.
	Brauer_2005_PMID_15758028	Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures.
	Brauer_2008_PMID_17959824	Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast.
	Brem_2005_PMID_15659551	The landscape of genetic complexity across 5,700 gene expression traits in yeast.
	Bro_2003_PMID_12791685	Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells.
	Brown_2008_PMID_18422925	Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae.
	Bulik_2003_PMID_14555471	Chitin synthesis in Saccharomyces cerevisiae in response to supplementation of growth medium with glucosamine and cell wall stress.
	Caba_2005_PMID_15878181	Differentiating mechanisms of toxicity using global gene expression analysis in Saccharomyces cerevisiae.
	Capaldi_2008_PMID_18931682	Structure and function of a transcriptional network activated by the MAPK Hog1.
	Carmel-Harel_2001_PMID_11169101	Role of thioredoxin reductase in the Yap1p-dependent response to oxidative stress in Saccharomyces cerevisiae.
	Carroll_2001_PMID_11675494	Chemical inhibition of the Pho85 cyclin-dependent kinase reveals a role in the environmental stress response.
	Carter_2007_PMID_17389876	Prediction of phenotype and gene expression for combinations of mutations.
	Causton_2001_PMID_11179418	Remodeling of yeast genome expression in response to environmental changes.
	Chan_2008_PMID_18708563	Anoxia-induced suspended animation in budding yeast as an experimental paradigm for studying oxygen-regulated gene expression.
	Chechik_2008_PMID_18953355	Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network.
	Chen_2006_PMID_16397762	Coordinate regulation of multiple and distinct biosynthetic pathways by TOR and PKA kinases in S. cerevisiae.
	Cheung_2008_PMID_18998772	Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome.
	Chitikila_2002_PMID_12419230	Interplay of TBP inhibitors in global transcriptional control.
	Cho_1998_PMID_9702192	A genome-wide transcriptional analysis of the mitotic cell cycle.
	Chu_1998_PMID_9784122	The transcriptional program of sporulation in budding yeast.
	Chua_2006_PMID_16880382	Identifying transcription factor functions and targets by phenotypic activation.
	Cipollina_2008_PMID_18174152	Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study.
	Cipollina_2008_PMID_18524923	Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis.
	Clark_2002_PMID_11988574	Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays.
	Cohen_2002_PMID_12006656	Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks.
	Cullen_2004_PMID_15256499	A signaling mucin at the head of the Cdc42- and MAPK-dependent filamentous growth pathway in yeast.
	Daran-Lapujade_2004_PMID_14630934	Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.
	Daran-Lapujade_2007_PMID_17898166	The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels.
	De_Nadal_2004_PMID_14737171	The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes.
	De_Nicola_2007_PMID_17933919	Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat cultures.
	DeRisi_1997_PMID_9381177	Exploring the metabolic and genetic control of gene expression on a genomic scale.
	Dettman_2007_PMID_17538619	Incipient speciation by divergent adaptation and antagonistic epistasis in yeast.
	Dion_2005_PMID_15795371	Genomic characterization reveals a simple histone H4 acetylation code.
	Dong_2007_PMID_17317628	YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA.
	Dubacq_2006_PMID_16328372	Role of the iron mobilization and oxidative stress regulons in the genomic response of yeast to hydroxyurea.
	Duvel_2003_PMID_12820961	Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast.
	Epstein_2001_PMID_11179416	Genome-wide responses to mitochondrial dysfunction.
	Erdogan_2008_PMID_18713793	High frequency of submicroscopic genomic aberrations detected by tiling path array comparative genome hybridisation in patients with isolated congenital heart disease.
	Eriksson_2005_PMID_16199888	Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements.
	Erlich_2008_PMID_19005567	Anc1, a protein associated with multiple transcription complexes, is involved in postreplication repair pathway in S. cerevisiae.
	Ferea_1999_PMID_10449761	Systematic changes in gene expression patterns following adaptive evolution in yeast.
	Fleming_2002_PMID_11830665	Complementary whole-genome technologies reveal the cellular response to proteasome inhibition by PS-341.
	Friedlander_2006_PMID_16542486	Modulation of the transcription regulatory program in yeast cells committed to sporulation.
	Fry_2003_PMID_12875747	DNA damage and stress transcripts in Saccharomyces cerevisiae mutant sgs1.
	Fry_2006_PMID_17163986	The DNA-damage signature in Saccharomyces cerevisiae is associated with single-strand breaks in DNA.
	Galitski_1999_PMID_10398601	Ploidy regulation of gene expression.
	Garcia_2009_PMID_19234305	The high osmotic response and cell wall integrity pathways cooperate to regulate transcriptional responses to zymolyase-induced cell wall stress in Saccharomyces cerevisiae.
	Gardner_2005_PMID_15797381	Degradation-mediated protein quality control in the nucleus.
	Gardner_2005_PMID_15988024	Ubp10/Dot4p regulates the persistence of ubiquitinated histone H2B: distinct roles in telomeric silencing and general chromatin.
	Gasch_2000_PMID_11102521	Genomic expression programs in the response of yeast cells to environmental changes.
	Gasch_2001_PMID_11598186	Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p.
	Gonzalez_2006_PMID_16973600	Transcriptional profiling of the protein phosphatase 2C family in yeast provides insights into the unique functional roles of Ptc1.
	Gresham_2008_PMID_19079573	The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast.
	Gross_2000_PMID_10922376	Identification of the copper regulon in Saccharomyces cerevisiae by DNA microarrays.
	Grund_2008_PMID_18762579	The inner nuclear membrane protein Src1 associates with subtelomeric genes and alters their regulated gene expression.
	Guan_2006_PMID_17166056	Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast.
	Guo_2006_PMID_16122766	Analysis of cellular responses to aflatoxin B(1) in yeast expressing human cytochrome P450 1A2 using cDNA microarrays.
	Hardwick_1999_PMID_10611304	Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins.
	Haugen_2004_PMID_15575969	Integrating phenotypic and expression profiles to map arsenic-response networks.
	Hazelwood_2008_PMID_18281432	The Ehrlich pathway for fusel alcohol production: a century of research on Saccharomyces cerevisiae metabolism.
	Hickman_2007_PMID_17785431	Heme levels switch the function of Hap1 of Saccharomyces cerevisiae between transcriptional activator and transcriptional repressor.
	Holbein_2009_PMID_19324962	Cordycepin interferes with 3' end formation in yeast independently of its potential to terminate RNA chain elongation.
	Hu_2007_PMID_17417638	Genetic reconstruction of a functional transcriptional regulatory network.
	Huang_2002_PMID_12077337	Dissection of a complex phenotype by functional genomics reveals roles for the yeast cyclin-dependent protein kinase Pho85 in stress adaptation and cell integrity.
	Huang_2004_PMID_15539461	Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips.
	Hughes_2000_PMID_10929718	Functional discovery via a compendium of expression profiles.
	Huisinga_2007_PMID_17407552	A TATA binding protein regulatory network that governs transcription complex assembly.
	Ideker_2001_PMID_11340206	Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
	Irvin_2006_PMID_16407318	Genome-wide transcriptional dependence on TAF1 functional domains.
	Iwahashi_2007_PMID_17408496	Evaluation of toxicity of the mycotoxin citrinin using yeast ORF DNA microarray and Oligo DNA microarray.
	Iwahashi_2007_PMID_18075112	Combined cadmium and thiuram show synergistic toxicity and induce mitochondrial petite mutants.
	James_2007_PMID_17660549	A SAGA-independent function of SPT3 mediates transcriptional deregulation in a mutant of the Ccr4-not complex in Saccharomyces cerevisiae.
	Jansen_2004_PMID_15066785	Prolonged maltose-limited cultivation of Saccharomyces cerevisiae selects for cells with improved maltose affinity and hypersensitivity.
	Jansen_2005_PMID_15870473	Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity.
	Jin_2004_PMID_15528549	Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response.
	Jin_2007_PMID_17664279	Simultaneous mutation of methylated lysine residues in histone H3 causes enhanced gene silencing, cell cycle defects, and cell lethality in Saccharomyces cerevisiae.
	Johanson_2006_PMID_16440349	Gene expression and survival changes in Saccharomyces cerevisiae during suspension culture.
	Johansson_2007_PMID_18087042	Association of yeast Upf1p with direct substrates of the NMD pathway.
	Jones_2003_PMID_14570984	Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway.
	Joseph-Strauss_2007_PMID_17999778	Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks.
	Kao_2008_PMID_19029899	Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae.
	Kaplan_2008_PMID_19023413	Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast.
	Keller_2001_PMID_11504737	Haa1, a protein homologous to the copper-regulated transcription factor Ace1, is a novel transcriptional activator.
	Kelly_2006_PMID_16720269	Cellular effects induced by the antitumor agent azinomycin B.
	Kim_2009_PMID_19456872	Dissecting the pleiotropic consequences of a quantitative trait nucleotide.
	Kitagawa_2002_PMID_12269742	Effects of the pesticide thiuram: genome-wide screening of indicator genes by yeast DNA microarray.
	Kitagawa_2003_PMID_12854720	Correlation of the structures of agricultural fungicides to gene expression in Saccharomyces cerevisiae upon exposure to toxic doses.
	Kitagawa_2005_PMID_16377885	Effects of iodine on global gene expression in Saccharomyces cerevisiae.
	Klevecz_2004_PMID_14734811	A genomewide oscillation in transcription gates DNA replication and cell cycle.
	Klockow_2008_PMID_18455824	In vivo regulation of glucose transporter genes at glucose concentrations between 0 and 500 mg/L in a wild type of Saccharomyces cerevisiae.
	Knijnenburg_2007_PMID_17241460	Exploiting combinatorial cultivation conditions to infer transcriptional regulation.
	Knijnenburg_2009_PMID_19173729	Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data.
	Komili_2007_PMID_17981122	Functional specificity among ribosomal proteins regulates gene expression.
	Kresnowati_2006_PMID_16969341	When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation.
	Kugou_2007_PMID_17396017	Mre11 mediates gene regulation in yeast spore development.
	Kuhn_2001_PMID_11154278	Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source.
	Kundaje_2008_PMID_19008939	A predictive model of the oxygen and heme regulatory network in yeast.
	Kuranda_2006_PMID_16925551	Investigating the caffeine effects in the yeast Saccharomyces cerevisiae brings new insights into the connection between TOR, PKC and Ras/cAMP signalling pathways.
	Kvitek_2008_PMID_18927628	Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates.
	Lai_2006_PMID_16963631	Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae.
	Lai_2008_PMID_19105839	Comparison of the transcriptomic stress response evoked by antimycin A and oxygen deprivation in Saccharomyces cerevisiae.
	Landry_2006_PMID_16427747	Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes.
	Landry_2007_PMID_17525304	Genetic properties influencing the evolvability of gene expression.
	Leber_2004_PMID_15314654	IRE1-independent gain control of the unfolded protein response.
	Lee_2000_PMID_12760044	Arrest, adaptation, and recovery following a chromosome double-strand break in Saccharomyces cerevisiae.
	Lee_2005_PMID_15989963	Multiple RNA surveillance pathways limit aberrant expression of iron uptake mRNAs and prevent iron toxicity in S. cerevisiae.
	Levy_2007_PMID_17327914	Strategy of transcription regulation in the budding yeast.
	Li_2006_PMID_17043222	A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change.
	Liko_2007_PMID_17616518	Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae.
	Lopez_2000_PMID_10940042	Understanding the growth phenotype of the yeast gcr1 mutant in terms of global genomic expression patterns.
	Lyons_2000_PMID_10884426	Genome-wide characterization of the Zap1p zinc-responsive regulon in yeast.
	Madhani_1999_PMID_10535956	Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants.
	Malagon_2006_PMID_16510790	Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil.
	Marks_2008_PMID_18215224	Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response.
	Martin_2004_PMID_15476558	Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data.
	Marton_1998_PMID_9809554	Drug target validation and identification of secondary drug target effects using DNA microarrays.
	Matsumoto_2005_PMID_16209719	The stress response against denatured proteins in the deletion of cytosolic chaperones SSA1/2 is different from heat-shock response in Saccharomyces cerevisiae.
	Medintz_2007_PMID_17700863	Transcript and proteomic analyses of wild-type and gpa2 mutant Saccharomyces cerevisiae strains suggest a role for glycolytic carbon source sensing in pseudohyphal differentiation.
	Menacho-Marquez_2007_PMID_17890903	Gcn2p regulates a G1/S cell cycle checkpoint in response to DNA damage.
	Mendes-Ferreira_2007_PMID_17601813	Saccharomyces cerevisiae signature genes for predicting nitrogen deficiency during alcoholic fermentation.
	Mendiratta_2006_PMID_16415340	The DNA-binding domain of the yeast Spt10p activator includes a zinc finger that is homologous to foamy virus integrase.
	Meneghini_2003_PMID_12628191	Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin.
	Miyake_2004_PMID_15192094	Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae.
	Mizuguchi_2004_PMID_14645854	ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex.
	Mnaimneh_2004_PMID_15242642	Exploration of essential gene functions via titratable promoter alleles.
	Molina-Navarro_2008_PMID_18424442	Comprehensive transcriptional analysis of the oxidative response in yeast.
	Mutiu_2007_PMID_17447102	The role of histone ubiquitylation and deubiquitylation in gene expression as determined by the analysis of an HTB1(K123R) Saccharomyces cerevisiae strain.
	Mutiu_2007_PMID_17660562	Structure/function analysis of the phosphatidylinositol-3-kinase domain of yeast tra1.
	Nag_2008_PMID_18508805	A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast.
	O'Rourke_2004_PMID_14595107	Unique and redundant roles for HOG MAPK pathway components as revealed by whole-genome expression analysis.
	Oberstrass_2006_PMID_16429156	Shape-specific recognition in the structure of the Vts1p SAM domain with RNA.
	Ogawa_2000_PMID_11102525	New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis.
	Olesen_2002_PMID_12702272	The dynamics of the Saccharomyces carlsbergensis brewing yeast transcriptome during a production-scale lager beer fermentation.
	Orlandi_2004_PMID_14623890	Transcriptional profiling of ubp10 null mutant reveals altered subtelomeric gene expression and insurgence of oxidative stress response.
	Orlando_2008_PMID_18463633	Global control of cell-cycle transcription by coupled CDK and network oscillators.
	Pan_2008_PMID_18366703	Identification of molecular pathways affected by pterostilbene, a natural dimethylether analog of resveratrol.
	Parra_2006_PMID_16648479	Deciphering the roles of the histone H2B N-terminal domain in genome-wide transcription.
	Parra_2007_PMID_17724083	Regulation of gene transcription by the histone H2A N-terminal domain.
	Pelechano_2008_PMID_17914747	The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast.
	Penheiter_2005_PMID_16246724	A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets.
	Pitkanen_2004_PMID_15520001	Excess mannose limits the growth of phosphomannose isomerase PMI40 deletion strain of Saccharomyces cerevisiae.
	Pramila_2002_PMID_12464633	Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle.
	Pramila_2006_PMID_16912276	The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle.
	Primig_2000_PMID_11101837	The core meiotic transcriptome in budding yeasts.
	Prinz_2004_PMID_14993204	Control of yeast filamentous-form growth by modules in an integrated molecular network.
	Protchenko_2001_PMID_11673473	Three cell wall mannoproteins facilitate the uptake of iron in Saccharomyces cerevisiae.
	Protchenko_2008_PMID_18326586	Role of PUG1 in inducible porphyrin and heme transport in Saccharomyces cerevisiae.
	Puig_2008_PMID_18522836	Cooperation of two mRNA-binding proteins drives metabolic adaptation to iron deficiency.
	Reinke_2006_PMID_16923813	Caffeine targets TOR complex I and provides evidence for a regulatory link between the FRB and kinase domains of Tor1p.
	Ro_2008_PMID_18983675	Induction of multiple pleiotropic drug resistance genes in yeast engineered to produce an increased level of anti-malarial drug precursor, artemisinic acid.
	Roberts_2000_PMID_10657304	Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles.
	Roberts_2006_PMID_16741729	Transcriptome profiling of Saccharomyces cerevisiae during a transition from fermentative to glycerol-based respiratory growth reveals extensive metabolic and structural remodeling.
	Robertson_2000_PMID_10811893	The yeast A kinases differentially regulate iron uptake and respiratory function.
	Rodriguez-Navarro_2004_PMID_14718168	Sus1, a functional component of the SAGA histone acetylase complex and the nuclear pore-associated mRNA export machinery.
	Rodriguez-Quinones_2009_PMID_19426543	Differential gene expression signatures for cell wall integrity found in chitin synthase II (chs2Delta) and myosin II (myo1Delta) deficient cytokinesis mutants of Saccharomyces cerevisiae.
	Ronen_2006_PMID_16381818	Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source.
	Rosaleny_2005_PMID_16023114	Yeast HAT1 and HAT2 deletions have different life-span and transcriptome phenotypes.
	Rossouw_2009_PMID_19711068	Comparing the transcriptomes of wine yeast strains: toward understanding the interaction between environment and transcriptome during fermentation.
	Rudra_2005_PMID_15692568	Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins.
	Sabet_2004_PMID_15456858	Genome-wide analysis of the relationship between transcriptional regulation by Rpd3p and the histone H3 and H4 amino termini in budding yeast.
	Saldanha_2004_PMID_15240820	Nutritional homeostasis in batch and steady-state culture of yeast.
	Salusjarvi_2008_PMID_18533012	Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae.
	Sapra_2004_PMID_15452114	Genome-wide analysis of pre-mRNA splicing: intron features govern the requirement for the second-step factor, Prp17 in Saccharomyces cerevisiae and Schizosaccharomyces pombe.
	Schawalder_2004_PMID_15616569	Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1.
	Scherens_2006_PMID_16879428	Identification of direct and indirect targets of the Gln3 and Gat1 activators by transcriptional profiling in response to nitrogen availability in the short and long term.
	Schrader_2006_PMID_16987817	Temperature-sensitive eIF5A mutant accumulates transcripts targeted to the nonsense-mediated decay pathway.
	Segal_2003_PMID_12740579	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
	Shakoury-Elizeh_2004_PMID_14668481	Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae.
	Shalem_2008_PMID_18854817	Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation.
	Shapira_2004_PMID_15371544	Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress.
	Shirra_2008_PMID_18955495	A chemical genomics study identifies Snf1 as a repressor of GCN4 translation.
	Shivaswamy_2008_PMID_18212068	Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response.
	Simons_2006_PMID_16870766	Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae.
	Singh_2005_PMID_16332871	Transcriptional response of Saccharomyces cerevisiae to desiccation and rehydration.
	Smith_2002_PMID_12135984	Transcriptome profiling to identify genes involved in peroxisome assembly and function.
	Smith_2007_PMID_17551510	Transcriptional responses to fatty acid are coordinated by combinatorial control.
	Smith_2008_PMID_18416601	Gene-environment interaction in yeast gene expression.
	Spellman_1998_PMID_9843569	Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
	Sprouse_2009_PMID_19098311	TATA-binding protein variants that bypass the requirement for Mot1 in vivo.
	Stern_2007_PMID_17453047	Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge.
	Sudarsanam_2000_PMID_10725359	Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae.
	Tai_2005_PMID_15496405	Two-dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae.
	Takagi_2005_PMID_15837426	Ubiquitin ligase activity of TFIIH and the transcriptional response to DNA damage.
	Tanaka_2006_PMID_16943074	Functional genomic analysis of commercial baker's yeast during initial stages of model dough-fermentation.
	Thorsen_2007_PMID_17327492	Quantitative transcriptome, proteome, and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite.
	Tompa_2007_PMID_17179083	Histone H3 lysine 36 methylation antagonizes silencing in Saccharomyces cerevisiae independently of the Rpd3S histone deacetylase complex.
	Torres_2007_PMID_17702937	Effects of aneuploidy on cellular physiology and cell division in haploid yeast.
	Travers_2000_PMID_10847680	Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation.
	Tu_2005_PMID_16254148	Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.
	Urban_2007_PMID_17560372	Sch9 is a major target of TORC1 in Saccharomyces cerevisiae.
	van_Attikum_2004_PMID_15607975	Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair.
	van_den_Brink_2008_PMID_18304306	New insights into the Saccharomyces cerevisiae fermentation switch: dynamic transcriptional response to anaerobicity and glucose-excess.
	Vemuri_2007_PMID_17287356	Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae.
	Venkatasubrahmanyam_2007_PMID_17925448	Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z.
	Wang_2002_PMID_11972065	Precision and functional specificity in mRNA decay.
	Williams_2002_PMID_12370439	The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast.
	Willis_2008_PMID_18604275	Genetic interactions of MAF1 identify a role for Med20 in transcriptional repression of ribosomal protein genes.
	Wu_2008_PMID_18673560	Differential control of Zap1-regulated genes in response to zinc deficiency in Saccharomyces cerevisiae.
	Wyrick_1999_PMID_10586882	Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.
	Yamamoto_2005_PMID_15647283	Identification of a novel class of target genes and a novel type of binding sequence of heat shock transcription factor in Saccharomyces cerevisiae.
	Yarragudi_2007_PMID_17158163	Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae.
	Yeang_2005_PMID_15998451	Validation and refinement of gene-regulatory pathways on a network of physical interactions.
	Yiu_2008_PMID_18245757	Pathways change in expression during replicative aging in Saccharomyces cerevisiae.
	Yoshimoto_2002_PMID_12058033	Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae.
	Yu_2006_PMID_16461773	Contribution of the histone H3 and H4 amino termini to Gcn4p- and Gcn5p-mediated transcription in yeast.
	Yun_2000_PMID_10744769	Desferrioxamine-mediated iron uptake in Saccharomyces cerevisiae. Evidence for two pathways of iron uptake.
	Zhu_2000_PMID_10894548	Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth.
	Zhu_2008_PMID_18552845	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
	Zhu_2009_PMID_19158363	High-resolution DNA-binding specificity analysis of yeast transcription factors.
	archive	Old data archived for historical purposes

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