Data files from microarray experiments used to populate SPELL (Serial Pattern of Expression Levels Locator). These files are mostly in PCL format and are not regularly updated.

Name Description README
[DIR] Abbott_2008_PMID_18676708 Physiological and transcriptional responses to high concentrations of lactic acid in anaerobic chemostat cultures of Saccharomyces cerevisiae. [TXT]
[DIR] Agarwal_2008_PMID_18156292 Role of heme in the antifungal activity of the azaoxoaporphine alkaloid sampangine. [TXT]
[DIR] Aguilera_2005_PMID_15780657 Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations. [TXT]
[DIR] Albulescu_2012_PMID_22479188 A quantitative, high-throughput reverse genetic screen reveals novel connections between Pre-mRNA splicing and 5' and 3' end transcript determinants. [TXT]
[DIR] Almario_2013_PMID_23613173 Evolutionary engineering of Saccharomyces cerevisiae for enhanced tolerance to hydrolysates of lignocellulosic biomass. [TXT]
[DIR] Alper_2006_PMID_17158319 Engineering yeast transcription machinery for improved ethanol tolerance and production. [TXT]
[DIR] Ambroset_2011_PMID_22384338 Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach. [TXT]
[DIR] Anderson_2006_PMID_16896209 Antagonism between two mechanisms of antifungal drug resistance. [TXT]
[DIR] Anderson_2009_PMID_19273689 Gene expression and evolution of antifungal drug resistance. [TXT]
[DIR] Angell_2006_PMID_17185230 Pyocyanin isolated from a marine microbial population: synergistic production between two distinct bacterial species and mode of action. [TXT]
[DIR] Angus-Hill_2001_PMID_11336698 A Rsc3/Rsc30 zinc cluster dimer reveals novel roles for the chromatin remodeler RSC in gene expression and cell cycle control. [TXT]
[DIR] Ansari_2012_PMID_21971086 Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast. [TXT]
[DIR] Apweiler_2012_PMID_22697265 Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis. [TXT]
[DIR] Aragon_2006_PMID_16507144 Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress. [TXT]
[DIR] Aragon_2008_PMID_18199684 Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures. [TXT]
[DIR] Aristizabal_2013_PMID_24009531 High-throughput genetic and gene expression analysis of the RNAPII-CTD reveals unexpected connections to SRB10/CDK8. [TXT]
[DIR] Auld_2006_PMID_16543154 Genomic association of the proteasome demonstrates overlapping gene regulatory activity with transcription factor substrates. [TXT]
[DIR] Azzouz_2009_PMID_19155328 Specific roles for the Ccr4-Not complex subunits in expression of the genome. [TXT]
[DIR] Backhus_2001_PMID_12702356 Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions. [TXT]
[DIR] Baerends_2008_PMID_18378663 Engineering and analysis of a Saccharomyces cerevisiae strain that uses formaldehyde as an auxiliary substrate. [TXT]
[DIR] Baetz_2001_PMID_11533240 Transcriptional coregulation by the cell integrity mitogen-activated protein kinase Slt2 and the cell cycle regulator Swi4. [TXT]
[DIR] Barbara_2007_PMID_17124610 The transcription factor Gcr1 stimulates cell growth by participating in nutrient-responsive gene expression on a global level. [TXT]
[DIR] Barreto_2012_PMID_23039231 The short-term response of yeast to potassium starvation. [TXT]
[DIR] Batista-Nascimento_2013_PMID_23295455 Yeast protective response to arsenate involves the repression of the high affinity iron uptake system. [TXT]
[DIR] Bedalov_2001_PMID_11752457 Identification of a small molecule inhibitor of Sir2p. [TXT]
[DIR] Belli_2004_PMID_14722110 Saccharomyces cerevisiae glutaredoxin 5-deficient cells subjected to continuous oxidizing conditions are affected in the expression of specific sets of genes. [TXT]
[DIR] Benton_2006_PMID_17140446 Analyzing the dose-dependence of the Saccharomyces cerevisiae global transcriptional response to methyl methanesulfonate and ionizing radiation. [TXT]
[DIR] Bernstein_2000_PMID_11095743 Genomewide studies of histone deacetylase function in yeast. [TXT]
[DIR] Berry_2008_PMID_18753408 Stress-activated genomic expression changes serve a preparative role for impending stress in yeast. [TXT]
[DIR] Bessonov_2013_PMID_24130853 Functional analyses of NSF1 in wine yeast using interconnected correlation clustering and molecular analyses. [TXT]
[DIR] Bester_2012_PMID_22384390 Many Saccharomyces cerevisiae Cell Wall Protein Encoding Genes Are Coregulated by Mss11, but Cellular Adhesion Phenotypes Appear Only Flo Protein Dependent. [TXT]
[DIR] Boer_2005_PMID_15949974 Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures. [TXT]
[DIR] Boer_2007_PMID_17419774 Transcriptional responses of Saccharomyces cerevisiae to preferred and nonpreferred nitrogen sources in glucose-limited chemostat cultures. [TXT]
[DIR] Borde_2009_PMID_19078966 Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. [TXT]
[DIR] Braberg_2013_PMID_23932120 From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II. [TXT]
[DIR] Bradley_2009_PMID_19180179 Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae. [TXT]
[DIR] Brauer_2005_PMID_15758028 Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures. [TXT]
[DIR] Brauer_2008_PMID_17959824 Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. [TXT]
[DIR] Braun_2013_PMID_23207903 14-3-3 (Bmh) proteins regulate combinatorial transcription following RNA polymerase II recruitment by binding at Adr1-dependent promoters in Saccharomyces cerevisiae. [TXT]
[DIR] Braun_2013_PMID_23207903 14-3-3 (Bmh) proteins regulate combinatorial transcription following RNA polymerase II recruitment by binding at Adr1-dependent promoters in Saccharomyces cerevisiae. [TXT]
[DIR] Brem_2005_PMID_15659551 The landscape of genetic complexity across 5,700 gene expression traits in yeast. [TXT]
[DIR] Brion_2013_PMID_24094006 Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks. [TXT]
[DIR] Bristow_2014_PMID_25200947 Checkpoints couple transcription network oscillator dynamics to cell-cycle progression. [TXT]
[DIR] Bro_2003_PMID_12791685 Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells. [TXT]
[DIR] Brown_2008_PMID_18422925 Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae. [TXT]
[DIR] Bulik_2003_PMID_14555471 Chitin synthesis in Saccharomyces cerevisiae in response to supplementation of growth medium with glucosamine and cell wall stress. [TXT]
[DIR] Caba_2005_PMID_15878181 Differentiating mechanisms of toxicity using global gene expression analysis in Saccharomyces cerevisiae. [TXT]
[DIR] Capaldi_2008_PMID_18931682 Structure and function of a transcriptional network activated by the MAPK Hog1. [TXT]
[DIR] Carmel-Harel_2001_PMID_11169101 Role of thioredoxin reductase in the Yap1p-dependent response to oxidative stress in Saccharomyces cerevisiae. [TXT]
[DIR] Carroll_2001_PMID_11675494 Chemical inhibition of the Pho85 cyclin-dependent kinase reveals a role in the environmental stress response. [TXT]
[DIR] Carter_2007_PMID_17389876 Prediction of phenotype and gene expression for combinations of mutations. [TXT]
[DIR] Carter_2012_PMID_23071457 Use of pleiotropy to model genetic interactions in a population. [TXT]
[DIR] Casado_2011_PMID_21749328 The role of the protein kinase A pathway in the response to alkaline pH stress in yeast. [TXT]
[DIR] Casamayor_2012_PMID_22372618 The role of the Snf1 kinase in the adaptive response of Saccharomyces cerevisiae to alkaline pH stress. [TXT]
[DIR] Causton_2001_PMID_11179418 Remodeling of yeast genome expression in response to environmental changes. [TXT]
[DIR] Celona_2011_PMID_21738444 Substantial histone reduction modulates genomewide nucleosomal occupancy and global transcriptional output. [TXT]
[DIR] Chan_2008_PMID_18708563 Anoxia-induced suspended animation in budding yeast as an experimental paradigm for studying oxygen-regulated gene expression. [TXT]
[DIR] Chang_2013_PMID_23660188 Kdx1 regulates RCK1 gene expression by interacting with Rlm1 in Saccharomyces cerevisiae. [TXT]
[DIR] Chang_2013_PMID_24051094 Rck1 up-regulates Hog1 activity by down-regulating Slt2 activity in Saccharomyces cerevisiae. [TXT]
[DIR] Chechik_2008_PMID_18953355 Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network. [TXT]
[DIR] Chen_2006_PMID_16397762 Coordinate regulation of multiple and distinct biosynthetic pathways by TOR and PKA kinases in S. cerevisiae. [TXT]
[DIR] Cheung_2008_PMID_18998772 Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. [TXT]
[DIR] Chitikila_2002_PMID_12419230 Interplay of TBP inhibitors in global transcriptional control. [TXT]
[DIR] Chiu_2011_PMID_21147769 Cell cycle sensing of oxidative stress in Saccharomyces cerevisiae by oxidation of a specific cysteine residue in the transcription factor Swi6p. [TXT]
[DIR] Cho_1998_PMID_9702192 A genome-wide transcriptional analysis of the mitotic cell cycle. [TXT]
[DIR] Chu_1998_PMID_9784122 The transcriptional program of sporulation in budding yeast. [TXT]
[DIR] Chua_2006_PMID_16880382 Identifying transcription factor functions and targets by phenotypic activation. [TXT]
[DIR] Chumnanpuen_2012_PMID_22622761 Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast. [TXT]
[DIR] Cipollina_2008_PMID_18174152 Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study. [TXT]
[DIR] Cipollina_2008_PMID_18524923 Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis. [TXT]
[DIR] Clark_2002_PMID_11988574 Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays. [TXT]
[DIR] Cohen_2002_PMID_12006656 Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks. [TXT]
[DIR] Cullen_2004_PMID_15256499 A signaling mucin at the head of the Cdc42- and MAPK-dependent filamentous growth pathway in yeast. [TXT]
[DIR] Daran-Lapujade_2004_PMID_14630934 Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study. [TXT]
[DIR] Daran-Lapujade_2007_PMID_17898166 The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels. [TXT]
[DIR] De_Nadal_2004_PMID_14737171 The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes. [TXT]
[DIR] De_Nicola_2007_PMID_17933919 Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat cultures. [TXT]
[DIR] DeRisi_1997_PMID_9381177 Exploring the metabolic and genetic control of gene expression on a genomic scale. [TXT]
[DIR] Dettman_2007_PMID_17538619 Incipient speciation by divergent adaptation and antagonistic epistasis in yeast. [TXT]
[DIR] Dion_2005_PMID_15795371 Genomic characterization reveals a simple histone H4 acetylation code. [TXT]
[DIR] Dominissini_2012_PMID_22575960 Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. [TXT]
[DIR] Dong_2007_PMID_17317628 YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA. [TXT]
[DIR] Dori-Bachash_2011_PMID_21811398 Coupled evolution of transcription and mRNA degradation. [TXT]
[DIR] Drozdova_2014_PMID_25227157 Transcriptional response to the [ISP ] prion of Saccharomyces cerevisiae differs from that induced by the deletion of its structural gene, SFP1. [TXT]
[DIR] Dubacq_2006_PMID_16328372 Role of the iron mobilization and oxidative stress regulons in the genomic response of yeast to hydroxyurea. [TXT]
[DIR] Duvel_2003_PMID_12820961 Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast. [TXT]
[DIR] Dymond_2011_PMID_21918511 Synthetic chromosome arms function in yeast and generate phenotypic diversity by design. [TXT]
[DIR] Epstein_2001_PMID_11179416 Genome-wide responses to mitochondrial dysfunction. [TXT]
[DIR] Eriksson_2005_PMID_16199888 Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements. [TXT]
[DIR] Erlich_2008_PMID_19005567 Anc1, a protein associated with multiple transcription complexes, is involved in postreplication repair pathway in S. cerevisiae. [TXT]
[DIR] Ferea_1999_PMID_10449761 Systematic changes in gene expression patterns following adaptive evolution in yeast. [TXT]
[DIR] Fleming_2002_PMID_11830665 Complementary whole-genome technologies reveal the cellular response to proteasome inhibition by PS-341. [TXT]
[DIR] Flom_2012_PMID_22461145 Identification of an Hsp90 mutation that selectively disrupts cAMP/PKA signaling in Saccharomyces cerevisiae. [TXT]
[DIR] Friedlander_2006_PMID_16542486 Modulation of the transcription regulatory program in yeast cells committed to sporulation. [TXT]
[DIR] Fry_2003_PMID_12875747 DNA damage and stress transcripts in Saccharomyces cerevisiae mutant sgs1. [TXT]
[DIR] Fry_2006_PMID_17163986 The DNA-damage signature in Saccharomyces cerevisiae is associated with single-strand breaks in DNA. [TXT]
[DIR] Gaillard_2014_PMID_24603480 Cleavage factor I links transcription termination to DNA damage response and genome integrity maintenance in Saccharomyces cerevisiae. [TXT]
[DIR] Galitski_1999_PMID_10398601 Ploidy regulation of gene expression. [TXT]
[DIR] Garcia_2009_PMID_19234305 The high osmotic response and cell wall integrity pathways cooperate to regulate transcriptional responses to zymolyase-induced cell wall stress in Saccharomyces cerevisiae. [TXT]
[DIR] Garcia-Oliver_2013_PMID_23599000 A novel role for Sem1 and TREX-2 in transcription involves their impact on recruitment and H2B deubiquitylation activity of SAGA. [TXT]
[DIR] Garcia-Rodriguez_2012_PMID_22493290 Impaired manganese metabolism causes mitotic misregulation. [TXT]
[DIR] Gardner_2005_PMID_15797381 Degradation-mediated protein quality control in the nucleus. [TXT]
[DIR] Gardner_2005_PMID_15988024 Ubp10/Dot4p regulates the persistence of ubiquitinated histone H2B: distinct roles in telomeric silencing and general chromatin. [TXT]
[DIR] Gasch_2000_PMID_11102521 Genomic expression programs in the response of yeast cells to environmental changes. [TXT]
[DIR] Gasch_2001_PMID_11598186 Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. [TXT]
[DIR] Gil_2011_PMID_21842488 Transcriptional profiling in Saccharomyces cerevisiae relevant for predicting alachlor mechanisms of toxicity. [TXT]
[DIR] Gomez-Gonzalez_2011_PMID_21701562 Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles. [TXT]
[DIR] Gonzalez_2006_PMID_16973600 Transcriptional profiling of the protein phosphatase 2C family in yeast provides insights into the unique functional roles of Ptc1. [TXT]
[DIR] Gonzalez_2013_PMID_23704987 Ptc6 is required for proper rapamycin-induced down-regulation of the genes coding for ribosomal and rRNA processing proteins in S. cerevisiae. [TXT]
[DIR] Gonzalez-Aguilera_2011_PMID_21680710 Nab2 functions in the metabolism of RNA driven by polymerases II and III. [TXT]
[DIR] Gresham_2008_PMID_19079573 The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. [TXT]
[DIR] Gross_2000_PMID_10922376 Identification of the copper regulon in Saccharomyces cerevisiae by DNA microarrays. [TXT]
[DIR] Grund_2008_PMID_18762579 The inner nuclear membrane protein Src1 associates with subtelomeric genes and alters their regulated gene expression. [TXT]
[DIR] Guan_2006_PMID_17166056 Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast. [TXT]
[DIR] Guan_2012_PMID_22851651 Cellular memory of acquired stress resistance in Saccharomyces cerevisiae. [TXT]
[DIR] Guo_2006_PMID_16122766 Analysis of cellular responses to aflatoxin B(1) in yeast expressing human cytochrome P450 1A2 using cDNA microarrays. [TXT]
[DIR] Hao_2012_PMID_22179789 Signal-dependent dynamics of transcription factor translocation controls gene expression. [TXT]
[DIR] Hardwick_1999_PMID_10611304 Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins. [TXT]
[DIR] Hasunuma_2014_PMID_23916856 Co-expression of TAL1 and ADH1 in recombinant xylose-fermenting Saccharomyces cerevisiae improves ethanol production from lignocellulosic hydrolysates in the presence of furfural. [TXT]
[DIR] Haugen_2004_PMID_15575969 Integrating phenotypic and expression profiles to map arsenic-response networks. [TXT]
[DIR] Hazelwood_2008_PMID_18281432 The Ehrlich pathway for fusel alcohol production: a century of research on Saccharomyces cerevisiae metabolism. [TXT]
[DIR] Hebly_2014_PMID_24814792 Physiological and transcriptional responses of anaerobic chemostat cultures of Saccharomyces cerevisiae subjected to diurnal temperature cycles. [TXT]
[DIR] Herrera-Moyano_2014_PMID_24636987 The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts. [TXT]
[DIR] Hickman_2007_PMID_17785431 Heme levels switch the function of Hap1 of Saccharomyces cerevisiae between transcriptional activator and transcriptional repressor. [TXT]
[DIR] Holbein_2009_PMID_19324962 Cordycepin interferes with 3' end formation in yeast independently of its potential to terminate RNA chain elongation. [TXT]
[DIR] Hong_2011_PMID_21715660 Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis. [TXT]
[DIR] Hong_2012_PMID_22904057 Recovery of phenotypes obtained by adaptive evolution through inverse metabolic engineering. [TXT]
[DIR] Hou_2014_PMID_24237754 Management of the endoplasmic reticulum stress by activation of the heat shock response in yeast. [TXT]
[DIR] Hu_2007_PMID_17417638 Genetic reconstruction of a functional transcriptional regulatory network. [TXT]
[DIR] Huang_2002_PMID_12077337 Dissection of a complex phenotype by functional genomics reveals roles for the yeast cyclin-dependent protein kinase Pho85 in stress adaptation and cell integrity. [TXT]
[DIR] Huang_2004_PMID_15539461 Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips. [TXT]
[DIR] Hughes_2000_PMID_10929718 Functional discovery via a compendium of expression profiles. [TXT]
[DIR] Huisinga_2007_PMID_17407552 A TATA binding protein regulatory network that governs transcription complex assembly. [TXT]
[DIR] Ideker_2001_PMID_11340206 Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. [TXT]
[DIR] Irvin_2006_PMID_16407318 Genome-wide transcriptional dependence on TAF1 functional domains. [TXT]
[DIR] Iwahashi_2007_PMID_17408496 Evaluation of toxicity of the mycotoxin citrinin using yeast ORF DNA microarray and Oligo DNA microarray. [TXT]
[DIR] Iwahashi_2007_PMID_18075112 Combined cadmium and thiuram show synergistic toxicity and induce mitochondrial petite mutants. [TXT]
[DIR] Jaehnig_2013_PMID_23810556 Checkpoint kinases regulate a global network of transcription factors in response to DNA damage. [TXT]
[DIR] James_2007_PMID_17660549 A SAGA-independent function of SPT3 mediates transcriptional deregulation in a mutant of the Ccr4-not complex in Saccharomyces cerevisiae. [TXT]
[DIR] Jansen_2004_PMID_15066785 Prolonged maltose-limited cultivation of Saccharomyces cerevisiae selects for cells with improved maltose affinity and hypersensitivity. [TXT]
[DIR] Jansen_2005_PMID_15870473 Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity. [TXT]
[DIR] Jimeno_2011_PMID_21149575 New suppressors of THO mutations identify Thp3 (Ypr045c)-Csn12 as a protein complex involved in transcription elongation. [TXT]
[DIR] Jin_2004_PMID_15528549 Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. [TXT]
[DIR] Jin_2007_PMID_17664279 Simultaneous mutation of methylated lysine residues in histone H3 causes enhanced gene silencing, cell cycle defects, and cell lethality in Saccharomyces cerevisiae. [TXT]
[DIR] Johanson_2006_PMID_16440349 Gene expression and survival changes in Saccharomyces cerevisiae during suspension culture. [TXT]
[DIR] Johansson_2007_PMID_18087042 Association of yeast Upf1p with direct substrates of the NMD pathway. [TXT]
[DIR] Jones_2003_PMID_14570984 Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway. [TXT]
[DIR] Joseph-Strauss_2007_PMID_17999778 Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks. [TXT]
[DIR] Kao_2008_PMID_19029899 Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. [TXT]
[DIR] Kaplan_2008_PMID_19023413 Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast. [TXT]
[DIR] Keller_2001_PMID_11504737 Haa1, a protein homologous to the copper-regulated transcription factor Ace1, is a novel transcriptional activator. [TXT]
[DIR] Kelly_2006_PMID_16720269 Cellular effects induced by the antitumor agent azinomycin B. [TXT]
[DIR] Kim_2009_PMID_19456872 Dissecting the pleiotropic consequences of a quantitative trait nucleotide. [TXT]
[DIR] Kitagawa_2002_PMID_12269742 Effects of the pesticide thiuram: genome-wide screening of indicator genes by yeast DNA microarray. [TXT]
[DIR] Kitagawa_2003_PMID_12854720 Correlation of the structures of agricultural fungicides to gene expression in Saccharomyces cerevisiae upon exposure to toxic doses. [TXT]
[DIR] Kitagawa_2005_PMID_16377885 Effects of iodine on global gene expression in Saccharomyces cerevisiae. [TXT]
[DIR] Klevecz_2004_PMID_14734811 A genomewide oscillation in transcription gates DNA replication and cell cycle. [TXT]
[DIR] Klockow_2008_PMID_18455824 In vivo regulation of glucose transporter genes at glucose concentrations between 0 and 500 mg/L in a wild type of Saccharomyces cerevisiae. [TXT]
[DIR] Knijnenburg_2007_PMID_17241460 Exploiting combinatorial cultivation conditions to infer transcriptional regulation. [TXT]
[DIR] Knijnenburg_2009_PMID_19173729 Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data. [TXT]
[DIR] Komili_2007_PMID_17981122 Functional specificity among ribosomal proteins regulates gene expression. [TXT]
[DIR] Kresnowati_2006_PMID_16969341 When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation. [TXT]
[DIR] Kugou_2007_PMID_17396017 Mre11 mediates gene regulation in yeast spore development. [TXT]
[DIR] Kuhn_2001_PMID_11154278 Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source. [TXT]
[DIR] Kundaje_2008_PMID_19008939 A predictive model of the oxygen and heme regulatory network in yeast. [TXT]
[DIR] Kuranda_2006_PMID_16925551 Investigating the caffeine effects in the yeast Saccharomyces cerevisiae brings new insights into the connection between TOR, PKC and Ras/cAMP signalling pathways. [TXT]
[DIR] Kvitek_2008_PMID_18927628 Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates. [TXT]
[DIR] Lai_2006_PMID_16963631 Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae. [TXT]
[DIR] Lai_2008_PMID_19105839 Comparison of the transcriptomic stress response evoked by antimycin A and oxygen deprivation in Saccharomyces cerevisiae. [TXT]
[DIR] Lai_2013_PMID_23893744 Yeast hEST1A/B (SMG5/6)-like proteins contribute to environment-sensing adaptive gene expression responses. [TXT]
[DIR] Landry_2006_PMID_16427747 Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes. [TXT]
[DIR] Landry_2007_PMID_17525304 Genetic properties influencing the evolvability of gene expression. [TXT]
[DIR] Landry_2014_PMID_24714560 Regulation of a transcription factor network by Cdk1 coordinates late cell cycle gene expression. [TXT]
[DIR] Lanza_2012_PMID_22558379 Linking yeast Gcn5p catalytic function and gene regulation using a quantitative, graded dominant mutant approach. [TXT]
[DIR] Larsson_2013_PMID_23991176 Functional studies of the yeast med5, med15 and med16 mediator tail subunits. [TXT]
[DIR] Leber_2004_PMID_15314654 IRE1-independent gain control of the unfolded protein response. [TXT]
[DIR] Lee_2000_PMID_12760044 Arrest, adaptation, and recovery following a chromosome double-strand break in Saccharomyces cerevisiae. [TXT]
[DIR] Lee_2005_PMID_15989963 Multiple RNA surveillance pathways limit aberrant expression of iron uptake mRNAs and prevent iron toxicity in S. cerevisiae. [TXT]
[DIR] Lenstra_2011_PMID_21596317 The specificity and topology of chromatin interaction pathways in yeast. [TXT]
[DIR] Lenstra_2013_PMID_24324601 The role of Ctk1 kinase in termination of small non-coding RNAs. [TXT]
[DIR] Levy_2007_PMID_17327914 Strategy of transcription regulation in the budding yeast. [TXT]
[DIR] Lewis_2014_PMID_24970865 Genetic architecture of ethanol-responsive transcriptome variation in Saccharomyces cerevisiae strains. [TXT]
[DIR] Li_2006_PMID_17043222 A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change. [TXT]
[DIR] Liang_2013_PMID_23985319 Dissociation of the H3K36 demethylase Rph1 from chromatin mediates derepression of environmental stress-response genes under genotoxic stress in Saccharomyces cerevisiae. [TXT]
[DIR] Licursi_2014_PMID_24164706 The COP9 signalosome is involved in the regulation of lipid metabolism and of transition metals uptake in Saccharomyces cerevisiae. [TXT]
[DIR] Liko_2007_PMID_17616518 Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae. [TXT]
[DIR] Lin_2012_PMID_22308403 Analysis of Gal4-directed transcription activation using Tra1 mutants selectively defective for interaction with Gal4. [TXT]
[DIR] Liu_2013_PMID_23435897 Anaerobic alpha-amylase production and secretion with fumarate as the final electron acceptor in Saccharomyces cerevisiae. [TXT]
[DIR] Lopez_2000_PMID_10940042 Understanding the growth phenotype of the yeast gcr1 mutant in terms of global genomic expression patterns. [TXT]
[DIR] Lu_2014_PMID_24631914 The cohesin acetyltransferase Eco1 coordinates rDNA replication and transcription. [TXT]
[DIR] Lyons_2000_PMID_10884426 Genome-wide characterization of the Zap1p zinc-responsive regulon in yeast. [TXT]
[DIR] Macadangdang_2014_PMID_24939988 Evolution of histone 2A for chromatin compaction in eukaryotes. [TXT]
[DIR] Madhani_1999_PMID_10535956 Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants. [TXT]
[DIR] Malagon_2006_PMID_16510790 Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil. [TXT]
[DIR] Marks_2008_PMID_18215224 Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response. [TXT]
[DIR] Martin_2004_PMID_15476558 Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data. [TXT]
[DIR] Marton_1998_PMID_9809554 Drug target validation and identification of secondary drug target effects using DNA microarrays. [TXT]
[DIR] Matsumoto_2005_PMID_16209719 The stress response against denatured proteins in the deletion of cytosolic chaperones SSA1/2 is different from heat-shock response in Saccharomyces cerevisiae. [TXT]
[DIR] Medintz_2007_PMID_17700863 Transcript and proteomic analyses of wild-type and gpa2 mutant Saccharomyces cerevisiae strains suggest a role for glycolytic carbon source sensing in pseudohyphal differentiation. [TXT]
[DIR] Menacho-Marquez_2007_PMID_17890903 Gcn2p regulates a G1/S cell cycle checkpoint in response to DNA damage. [TXT]
[DIR] Mendes_2013_PMID_23872557 Transcriptome-based characterization of interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat cocultures. [TXT]
[DIR] Mendes-Ferreira_2007_PMID_17601813 Saccharomyces cerevisiae signature genes for predicting nitrogen deficiency during alcoholic fermentation. [TXT]
[DIR] Mendiratta_2006_PMID_16415340 The DNA-binding domain of the yeast Spt10p activator includes a zinc finger that is homologous to foamy virus integrase. [TXT]
[DIR] Meneghini_2003_PMID_12628191 Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin. [TXT]
[DIR] Miller-Fleming_2014_PMID_24706893 Yeast DJ-1 superfamily members are required for diauxic-shift reprogramming and cell survival in stationary phase. [TXT]
[DIR] Miyake_2004_PMID_15192094 Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae. [TXT]
[DIR] Mizuguchi_2004_PMID_14645854 ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. [TXT]
[DIR] Mnaimneh_2004_PMID_15242642 Exploration of essential gene functions via titratable promoter alleles. [TXT]
[DIR] Molina-Navarro_2008_PMID_18424442 Comprehensive transcriptional analysis of the oxidative response in yeast. [TXT]
[DIR] Moreno-Cermeno_2013_PMID_24100161 Metabolic remodeling in frataxin-deficient yeast is mediated by Cth2 and Adr1. [TXT]
[DIR] Morillo-Huesca_2010_PMID_20711347 The SWR1 histone replacement complex causes genetic instability and genome-wide transcription misregulation in the absence of H2A.Z. [TXT]
[DIR] Munding_2010_PMID_21123654 Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiae. [TXT]
[DIR] Mutiu_2007_PMID_17447102 The role of histone ubiquitylation and deubiquitylation in gene expression as determined by the analysis of an HTB1(K123R) Saccharomyces cerevisiae strain. [TXT]
[DIR] Mutiu_2007_PMID_17660562 Structure/function analysis of the phosphatidylinositol-3-kinase domain of yeast tra1. [TXT]
[DIR] Nag_2008_PMID_18508805 A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast. [TXT]
[DIR] Navlakha_2012_PMID_22916002 A network-based approach for predicting missing pathway interactions. [TXT]
[DIR] Ng_2013_PMID_24037263 Kinetochore function and chromosome segregation rely on critical residues in histones H3 and H4 in budding yeast. [TXT]
[DIR] Niles_2012_PMID_22307609 Plasma membrane recruitment and activation of the AGC kinase Ypk1 is mediated by target of rapamycin complex 2 (TORC2) and its effector proteins Slm1 and Slm2. [TXT]
[DIR] O'Doherty_2013_PMID_24074273 Transcriptomic insights into the molecular response of Saccharomyces cerevisiae to linoleic acid hydroperoxide. [TXT]
[DIR] O'Duibhir_2014_PMID_24952590 Cell cycle population effects in perturbation studies. [TXT]
[DIR] O'Rourke_2004_PMID_14595107 Unique and redundant roles for HOG MAPK pathway components as revealed by whole-genome expression analysis. [TXT]
[DIR] Oberstrass_2006_PMID_16429156 Shape-specific recognition in the structure of the Vts1p SAM domain with RNA. [TXT]
[DIR] Ogawa_2000_PMID_11102525 New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis. [TXT]
[DIR] Olesen_2002_PMID_12702272 The dynamics of the Saccharomyces carlsbergensis brewing yeast transcriptome during a production-scale lager beer fermentation. [TXT]
[DIR] Orlandi_2004_PMID_14623890 Transcriptional profiling of ubp10 null mutant reveals altered subtelomeric gene expression and insurgence of oxidative stress response. [TXT]
[DIR] Orlando_2008_PMID_18463633 Global control of cell-cycle transcription by coupled CDK and network oscillators. [TXT]
[DIR] Oromendia_2012_PMID_23222101 Aneuploidy causes proteotoxic stress in yeast. [TXT]
[DIR] Pan_2008_PMID_18366703 Identification of molecular pathways affected by pterostilbene, a natural dimethylether analog of resveratrol. [TXT]
[DIR] Papini_2010_PMID_20815084 Phosphoglycerate mutase knock-out mutant Saccharomyces cerevisiae: physiological investigation and transcriptome analysis. [TXT]
[DIR] Parra_2006_PMID_16648479 Deciphering the roles of the histone H2B N-terminal domain in genome-wide transcription. [TXT]
[DIR] Parra_2007_PMID_17724083 Regulation of gene transcription by the histone H2A N-terminal domain. [TXT]
[DIR] Pelechano_2008_PMID_17914747 The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast. [TXT]
[DIR] Penheiter_2005_PMID_16246724 A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets. [TXT]
[DIR] Pitkanen_2004_PMID_15520001 Excess mannose limits the growth of phosphomannose isomerase PMI40 deletion strain of Saccharomyces cerevisiae. [TXT]
[DIR] Pramila_2002_PMID_12464633 Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle. [TXT]
[DIR] Pramila_2006_PMID_16912276 The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle. [TXT]
[DIR] Primig_2000_PMID_11101837 The core meiotic transcriptome in budding yeasts. [TXT]
[DIR] Prinz_2004_PMID_14993204 Control of yeast filamentous-form growth by modules in an integrated molecular network. [TXT]
[DIR] Protchenko_2001_PMID_11673473 Three cell wall mannoproteins facilitate the uptake of iron in Saccharomyces cerevisiae. [TXT]
[DIR] Protchenko_2008_PMID_18326586 Role of PUG1 in inducible porphyrin and heme transport in Saccharomyces cerevisiae. [TXT]
[DIR] Puig_2008_PMID_18522836 Cooperation of two mRNA-binding proteins drives metabolic adaptation to iron deficiency. [TXT]
[DIR] Rachfall_2013_PMID_23071099 RACK1/Asc1p, a ribosomal node in cellular signaling. [TXT]
[DIR] Reinke_2006_PMID_16923813 Caffeine targets TOR complex I and provides evidence for a regulatory link between the FRB and kinase domains of Tor1p. [TXT]
[DIR] Reyes_2014_PMID_24262517 Improving carotenoids production in yeast via adaptive laboratory evolution. [TXT]
[DIR] Rintala_2011_PMID_21348598 Transcriptional responses of Saccharomyces cerevisiae to shift from respiratory and respirofermentative to fully fermentative metabolism. [TXT]
[DIR] Ro_2008_PMID_18983675 Induction of multiple pleiotropic drug resistance genes in yeast engineered to produce an increased level of anti-malarial drug precursor, artemisinic acid. [TXT]
[DIR] Roberts_2000_PMID_10657304 Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. [TXT]
[DIR] Roberts_2006_PMID_16741729 Transcriptome profiling of Saccharomyces cerevisiae during a transition from fermentative to glycerol-based respiratory growth reveals extensive metabolic and structural remodeling. [TXT]
[DIR] Robertson_2000_PMID_10811893 The yeast A kinases differentially regulate iron uptake and respiratory function. [TXT]
[DIR] Rodriguez-Lombardero_2014_PMID_24763424 Sky1 regulates the expression of sulfur metabolism genes in response to cisplatin. [TXT]
[DIR] Rodriguez-Navarro_2004_PMID_14718168 Sus1, a functional component of the SAGA histone acetylase complex and the nuclear pore-associated mRNA export machinery. [TXT]
[DIR] Rodriguez-Quinones_2009_PMID_19426543 Differential gene expression signatures for cell wall integrity found in chitin synthase II (chs2Delta) and myosin II (myo1Delta) deficient cytokinesis mutants of Saccharomyces cerevisiae. [TXT]
[DIR] Romagnoli_2014_PMID_24733517 Deletion of the Saccharomyces cerevisiae ARO8 gene, encoding an aromatic amino acid transaminase, enhances phenylethanol production from glucose. [TXT]
[DIR] Ronen_2006_PMID_16381818 Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source. [TXT]
[DIR] Rosaleny_2005_PMID_16023114 Yeast HAT1 and HAT2 deletions have different life-span and transcriptome phenotypes. [TXT]
[DIR] Rossmann_2011_PMID_21474074 A common telomeric gene silencing assay is affected by nucleotide metabolism. [TXT]
[DIR] Rossouw_2009_PMID_19711068 Comparing the transcriptomes of wine yeast strains: toward understanding the interaction between environment and transcriptome during fermentation. [TXT]
[DIR] Roy_2013_PMID_23640720 Arboretum: reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules. [TXT]
[DIR] Rudra_2005_PMID_15692568 Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins. [TXT]
[DIR] Sabet_2004_PMID_15456858 Genome-wide analysis of the relationship between transcriptional regulation by Rpd3p and the histone H3 and H4 amino termini in budding yeast. [TXT]
[DIR] Saint_2014_PMID_24550006 The TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation. [TXT]
[DIR] Saldanha_2004_PMID_15240820 Nutritional homeostasis in batch and steady-state culture of yeast. [TXT]
[DIR] Salusjarvi_2008_PMID_18533012 Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae. [TXT]
[DIR] Santos-Pereira_2013_PMID_24240235 The Npl3 hnRNP prevents R-loop-mediated transcription-replication conflicts and genome instability. [TXT]
[DIR] Sanz_2012_PMID_22621902 Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway. [TXT]
[DIR] Sapra_2004_PMID_15452114 Genome-wide analysis of pre-mRNA splicing: intron features govern the requirement for the second-step factor, Prp17 in Saccharomyces cerevisiae and Schizosaccharomyces pombe. [TXT]
[DIR] Schawalder_2004_PMID_15616569 Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1. [TXT]
[DIR] Scherens_2006_PMID_16879428 Identification of direct and indirect targets of the Gln3 and Gat1 activators by transcriptional profiling in response to nitrogen availability in the short and long term. [TXT]
[DIR] Schrader_2006_PMID_16987817 Temperature-sensitive eIF5A mutant accumulates transcripts targeted to the nonsense-mediated decay pathway. [TXT]
[DIR] Segal_2003_PMID_12740579 Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. [TXT]
[DIR] Sha_2013_PMID_24073228 The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide. [TXT]
[DIR] Shakoury-Elizeh_2004_PMID_14668481 Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae. [TXT]
[DIR] Shalem_2008_PMID_18854817 Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. [TXT]
[DIR] Shalem_2011_PMID_21931566 Transcriptome kinetics is governed by a genome-wide coupling of mRNA production and degradation: a role for RNA Pol II. [TXT]
[DIR] Shapira_2004_PMID_15371544 Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress. [TXT]
[DIR] Sheltzer_2012_PMID_22802626 Transcriptional consequences of aneuploidy. [TXT]
[DIR] Shirra_2008_PMID_18955495 A chemical genomics study identifies Snf1 as a repressor of GCN4 translation. [TXT]
[DIR] Shivaswamy_2008_PMID_18212068 Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response. [TXT]
[DIR] Simmons_Kovacs_2012_PMID_22306294 Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network. [TXT]
[DIR] Simons_2006_PMID_16870766 Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. [TXT]
[DIR] Singh_2005_PMID_16332871 Transcriptional response of Saccharomyces cerevisiae to desiccation and rehydration. [TXT]
[DIR] Slavov_2014_PMID_24767987 Constant growth rate can be supported by decreasing energy flux and increasing aerobic glycolysis. [TXT]
[DIR] Smith_2002_PMID_12135984 Transcriptome profiling to identify genes involved in peroxisome assembly and function. [TXT]
[DIR] Smith_2007_PMID_17551510 Transcriptional responses to fatty acid are coordinated by combinatorial control. [TXT]
[DIR] Smith_2008_PMID_18416601 Gene-environment interaction in yeast gene expression. [TXT]
[DIR] Spedale_2012_PMID_21976730 Tight cooperation between Mot1p and NC2beta in regulating genome-wide transcription, repression of transcription following heat shock induction and genetic interaction with SAGA. [TXT]
[DIR] Spellman_1998_PMID_9843569 Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. [TXT]
[DIR] Sprouse_2009_PMID_19098311 TATA-binding protein variants that bypass the requirement for Mot1 in vivo. [TXT]
[DIR] Stern_2007_PMID_17453047 Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge. [TXT]
[DIR] Stovicek_2014_PMID_24533484 Global changes in gene expression associated with phenotypic switching of wild yeast. [TXT]
[DIR] Sudarsanam_2000_PMID_10725359 Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae. [TXT]
[DIR] Suzuki_2012_PMID_22897823 Comprehensive gene expression analysis of type B trichothecenes. [TXT]
[DIR] Suzuki_2013_PMID_23325148 RNA preparation of Saccharomyces cerevisiae using the digestion method may give misleading results. [TXT]
[DIR] Tai_2005_PMID_15496405 Two-dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae. [TXT]
[DIR] Takagi_2005_PMID_15837426 Ubiquitin ligase activity of TFIIH and the transcriptional response to DNA damage. [TXT]
[DIR] Takahashi_2011_PMID_21474073 Dot1 and histone H3K79 methylation in natural telomeric and HM silencing. [TXT]
[DIR] Tanaka_2006_PMID_16943074 Functional genomic analysis of commercial baker's yeast during initial stages of model dough-fermentation. [TXT]
[DIR] Tesniere_2013_PMID_23658613 Impact of nutrient imbalance on wine alcoholic fermentations: nitrogen excess enhances yeast cell death in lipid-limited must. [TXT]
[DIR] Thibault_2011_PMID_22143797 The unfolded protein response supports cellular robustness as a broad-spectrum compensatory pathway. [TXT]
[DIR] Thibault_2012_PMID_23000174 The membrane stress response buffers lethal effects of lipid disequilibrium by reprogramming the protein homeostasis network. [TXT]
[DIR] Thorsen_2007_PMID_17327492 Quantitative transcriptome, proteome, and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite. [TXT]
[DIR] Tirosh_2008_PMID_18197176 On the relation between promoter divergence and gene expression evolution. [TXT]
[DIR] Tompa_2007_PMID_17179083 Histone H3 lysine 36 methylation antagonizes silencing in Saccharomyces cerevisiae independently of the Rpd3S histone deacetylase complex. [TXT]
[DIR] Torres_2007_PMID_17702937 Effects of aneuploidy on cellular physiology and cell division in haploid yeast. [TXT]
[DIR] Travers_2000_PMID_10847680 Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation. [TXT]
[DIR] Travesa_2012_PMID_22333915 DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1. [TXT]
[DIR] Tsang_2014_PMID_24647101 Superoxide dismutase 1 acts as a nuclear transcription factor to regulate oxidative stress resistance. [TXT]
[DIR] Tu_2005_PMID_16254148 Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. [TXT]
[DIR] Tyo_2012_PMID_22380681 Imbalance of heterologous protein folding and disulfide bond formation rates yields runaway oxidative stress. [TXT]
[DIR] Urban_2007_PMID_17560372 Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. [TXT]
[DIR] van_Attikum_2004_PMID_15607975 Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair. [TXT]
[DIR] van_de_Pasch_2013_PMID_23785440 Centromere binding and a conserved role in chromosome stability for SUMO-dependent ubiquitin ligases. [TXT]
[DIR] van_den_Brink_2008_PMID_18304306 New insights into the Saccharomyces cerevisiae fermentation switch: dynamic transcriptional response to anaerobicity and glucose-excess. [TXT]
[DIR] Vemuri_2007_PMID_17287356 Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae. [TXT]
[DIR] Venkatasubrahmanyam_2007_PMID_17925448 Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z. [TXT]
[DIR] Verzijlbergen_2011_PMID_21998594 A barcode screen for epigenetic regulators reveals a role for the NuB4/HAT-B histone acetyltransferase complex in histone turnover. [TXT]
[DIR] Vizoso-Vazquez_2012_PMID_22189861 Ixr1p and the control of the Saccharomyces cerevisiae hypoxic response. [TXT]
[DIR] Wang_2002_PMID_11972065 Precision and functional specificity in mRNA decay. [TXT]
[DIR] Wenger_2011_PMID_21829391 Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency. [TXT]
[DIR] Williams_2002_PMID_12370439 The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast. [TXT]
[DIR] Willis_2008_PMID_18604275 Genetic interactions of MAF1 identify a role for Med20 in transcriptional repression of ribosomal protein genes. [TXT]
[DIR] Worley_2013_PMID_23643537 Inositol pyrophosphates regulate cell growth and the environmental stress response by activating the HDAC Rpd3L. [TXT]
[DIR] Wu_2008_PMID_18673560 Differential control of Zap1-regulated genes in response to zinc deficiency in Saccharomyces cerevisiae. [TXT]
[DIR] Wyrick_1999_PMID_10586882 Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. [TXT]
[DIR] Xue-Franzen_2013_PMID_23865462 Distinct roles of the Gcn5 histone acetyltransferase revealed during transient stress-induced reprogramming of the genome. [TXT]
[DIR] Yamamoto_2005_PMID_15647283 Identification of a novel class of target genes and a novel type of binding sequence of heat shock transcription factor in Saccharomyces cerevisiae. [TXT]
[DIR] Yamane-Sando_2014_PMID_24510621 Fpk1/2 kinases regulate cellular sphingoid long-chain base abundance and alter cellular resistance to LCB elevation or depletion. [TXT]
[DIR] Yarragudi_2007_PMID_17158163 Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae. [TXT]
[DIR] Yeang_2005_PMID_15998451 Validation and refinement of gene-regulatory pathways on a network of physical interactions. [TXT]
[DIR] Yiu_2008_PMID_18245757 Pathways change in expression during replicative aging in Saccharomyces cerevisiae. [TXT]
[DIR] Yona_2012_PMID_23197825 Chromosomal duplication is a transient evolutionary solution to stress. [TXT]
[DIR] Yoshimoto_2002_PMID_12058033 Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae. [TXT]
[DIR] Yu_2006_PMID_16461773 Contribution of the histone H3 and H4 amino termini to Gcn4p- and Gcn5p-mediated transcription in yeast. [TXT]
[DIR] Yun_2000_PMID_10744769 Desferrioxamine-mediated iron uptake in Saccharomyces cerevisiae. Evidence for two pathways of iron uptake. [TXT]
[DIR] Zhang_2011_PMID_22068328 Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae. [TXT]
[DIR] Zhou_2011_PMID_21700227 Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4. [TXT]
[DIR] Zhu_2000_PMID_10894548 Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth. [TXT]
[DIR] Zhu_2008_PMID_18552845 Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [TXT]
[DIR] Zhu_2009_PMID_19158363 High-resolution DNA-binding specificity analysis of yeast transcription factors. [TXT]
[DIR] archive Datasets that were used with Expression Connections [TXT]
[DIR] all_spell_exprconn_pcl.tar.gz Compressed file with all processed data in SPELL, in PCL format