Curated Data

Literature Curated Data

Information curated or otherwise assembled by the SGD staff.

  Name Description README
[TXT] biochemical_pathways.tab Biochemical pathway data in SGD [TXT]
[   ] gene_association.sgd.gz Gene Ontology (GO) annotations for yeast genes [TXT]
[TXT] gene_literature.tab Literature Guide information for references in SGD [TXT]
[TXT] genetic_loci.tab List of genetic loci with associated information [TXT]
[TXT] go_protein_complex_slim.tab Mapping of gene products to Macromolecular Complex GO-Slim terms [TXT]
[TXT] go_slim_mapping.tab Mapping of gene products to GO-Slim terms [TXT]
[TXT] go_terms.tab GO terms and their definitions [TXT]
[TXT] interaction_data.tab Interaction data incorporated into SGD from BioGRID [TXT]
[TXT] phenotype_data.tab Curated phenotype data in SGD readme-icon
[   ] yeastcyc15_201401.tar.gz Files to install Yeast Biochemical Pathways using Pathway Tools software  
[DIR] archive Previous versions of Literature Curated Data files  

 

Chromosomal Features

Information about S. cerevisiae chromosomal features annotated in SGD.

  Name Description README
[TXT] SGD_CDS_xref.txt SGD cross references for CDS entries in GenBank/EMBL/DDBJ [TXT]
[TXT] SGD_features.tab Chromosomal features, coordinates, gene descriptions. [TXT]
[TXT] chromosome_length.tab Lengths of the chromosomes, with RefSeq identifiers [TXT]
[TXT] clone.tab Yeast clones from WashU in St. Louis and the ATCC [TXT]
[TXT] dbxref.tab Mappings between SGD and external identifiers [TXT]
[TXT] deleted_merged_features.tab List of deleted or merged chromosomal features  
[TXT] genetic_map.tab Genetic two-point data submitted to SGD [TXT]
[TXT] ohnolog_YGOB.tab Paralog data from the Yeast Gene Order Browser [TXT]
[TXT] saccharomyces_cerevisiae.gff Genomic sequence features, coordinates and annotations. Used to load GBrowse. [TXT]
[TXT] scerevisiae_2-micron.gff 2-micron plasmid sequence features, coordinates and annotations. Used to load GBrowse. [TXT]
[TXT] scerevisiae_clonedata.gff Yeast clones from WashU in St. Louis and the ATCC, in Generic Feature Format Version 3 (gff3) [TXT]
[DIR] archive Previous versions of Chromosomal Features files  

 

Calculated Protein Information

Information about S. cerevisiae proteins and hypothetical peptides.

[ICO] Name Description README
[TXT] domains.tab InterProScan results [TXT]
[TXT] protein_properties.tab Basic protein information for each ORF in SGD [TXT]
[DIR] hypothetical_peptides/ All possible peptides of 20 amino acids or greater [TXT]
[DIR] archive of protein_properties Previous versions of protein_properties data files  
[DIR] archive of hypothetical_peptides Previous versions of hypothetical_peptides data files