Yeast Genetics and Molecular Biology 2000
University of Washington
Seattle, Washington USA
July 2000


Name: Washburn, Brian
Mailing Address: Mol. Genetics and Cell Biol. , University of Chicago, 920 E. 58th, Chicago, IL 60637, USA
Email Address: bwashbur@midway.uchicago.edu
Phone & FAX numbers: (773)702-8045 & (773)702-8093

#032

Genetic and whole-genome analysis of transcriptional regulation by UME6.
Brian Washburn (1), Roy Williams (2), Michael Primig (3), Ronald Davis (2), Rochelle Esposito (1)
(1) Mol. Genetics and Cell Biol. , University of Chicago, 920 E. 58th, Chicago, IL 60637, USA; (2) Stanford University Medical School, Department of Biochemistry, Stanford, CA 94305-5307; (3) Institut de Genetique Humaine, 141, rue de la Cardonille, 34396 Montpellier

The DNA-binding protein Ume6 is required for both repression and activation of many meiosis-specific genes in S. cerevisiae, through interaction with the corepressor Sin3 and meiotic activator Ime1, respectively. We find that fusion of a transcriptional activation domain to Ume6 is unable to convert it into a constitutive activator, indicating an additional function is needed to overcome repression. Mutations in UME6 allowing the fusion to activate cause loss of repression and lie in a predicted amphipathic alpha-helix. They disrupt interaction with Sin3 in vitro and in vivo and precisely define the Ume6 Sin3-binding domain, which interacts with the PAH2 region of Sin3. Our analysis indicates (1) Ime1 may play a dual role in providing both an activation domain and relieving Sin3-mediated repression, (2) premature expression and lack of rerepression of Ume6/Sin3-regulated genes is not deleterious to subsequent meiotic progression, and (3) since Sin3, but not its interaction with Ume6, is required for sporulation, Sin3 must play another, Ume6-independent, role in meiosis. We have also used DNA oligonucleotide microarrays to define the complete profile of UME6-regulated genes. 75 genes derepressed in ume6 deletion mutants contain the URS1 Ume6-binding site and are therefore likely direct targets. They include metabolic and sporulation functions. Among these, 34 are meiotically regulated in wild-type cells, mostly, but not exclusively, in the early expression class.


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