Chromosome VI Updates
Update 1
2001-05-29, submitted by Kara and Anand
Source
Notes
We received a direct notification from MIPS about
the following sequence changes; we did not have this change in SGD, so
the sequence was edited.
Sequence change(s)
This update removed 1 nucleotide at coordinate 46151; the nucleotide
'G' at this position was deleted. Due to this sequence change, YFL043C
is now part of YFL042C. The old coordinates for YFL042C and YFL043C
were 47745-46078 and 46157-45720, respectively. The new coordinates
for YFL042C are 47744-45720 and the source exons are 1-2025.
Update 2
2001-05-29, submitted by Kara and Anand
Source
Notes
We received a direct notification from MIPS about the following
sequence changes; we did not have this change in SGD, so the sequence
was edited.
Sequence change(s)
This update inserted 1 nucleotide at coordinate 75751; the nucleotide
'C' was inserted at this postion. Due to this sequence change, the
coordinates for the ORF YFL031W changed. The old coordinates for
YFL031W were 75178-75780. The new coordinates are 75177-76145 and the
source exons are 1-661, 914-969.
Update 3
2003-09-26, submitted by Anand
Source
- Robben et al. Revisiting the yeast chromosome VI DNA sequence
reveals a correction merging YFL007w and YFL006w to a single
ORF. Yeast. 2002 Jun 15;19(8):699-702.
- Personal communication from Tim Formosa, University of Utah
Sequence change(s)
YFL006W and YFL007W merged due to insertion of a G at position 128870.
Old: 128841 TTTGATCACCCATACGATCAGGTTCGCCAG-CTGTCGCTAAACTATTGACGACCTTAGTT 128899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
New: 128841 TTTGATCACCCATACGATCAGGTTCGCCAGGCTGTCGCTAAACTATTGACGACCTTAGTT 128900
Update 4
2003-09-26, submitted by Anand
Source
- Sequence verification in AB972 (S288c derivative strain) background by SGD
- Daniel Jablonowski, Andrew R. Butler, Lars Fichtner, Donald Gardiner, Raffael Schaffrath, and Michael J. R. Stark Sit4p Protein Phosphatase Is Required for Sensitivity of Saccharomyces cerevisiae to Kluyveromyces lactis Zymocin
Genetics 2001 159: 1479-1489.
- MM Luke, F Della Seta, CJ Di Como, H Sugimoto, R Kobayashi, and KT Arndt The SAP, a new family of proteins, associate and function positively with the SIT4 phosphataseMol. Cell. Biol. 1996. 16:2744-2755.
- Personal communication from Margaret Shirra
Sequence change(s)
Due to a sequence change on Chr VI (deletion of G at 234450), the
coordinates of SAP155/YFR040W were changed from 234521(start) - 237238
(stop) to 234229(start) 237237(stop)
Old: 234421 CATGGTGATGAAGTGAAAACGGCACGTGGGAGATCAGAAGAGTCGATTTGAGAAGGATGA 234480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
New: 234421 CATGGTGATGAAGTGAAAACGGCACGTGG-AGATCAGAAGAGTCGATTTGAGAAGGATGA 234479
Update 5
2003-09-26, submitted by Anand
Source
- Sequence verification in AB972 (S288c derivative strain) background by SGD
- Robben et al. Revisiting the yeast chromosome VI DNA sequence
reveals a correction merging YFL007w and YFL006w to a single
ORF. Yeast. 2002 Jun 15;19(8):699-702.
Sequence change(s)
Deletion of a G at 250082.
Old: 250051 TAAACTATATATATAGAAGGACGAAAGAAAAGGATACCTCGATTTTTATTTATTTAGTTT 250110
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
New: 250051 TAAACTATATATATAGAAGGACGAAAGAAAAG-ATACCTCGATTTTTATTTATTTAGTTT 250109
Update 6
2003-09-26, submitted by Anand
Source
- Sequence verification in AB972 (S288c derivative strain) background by SGD
- Robben et al. Revisiting the yeast chromosome VI DNA sequence
reveals a correction merging YFL007w and YFL006w to a single
ORF. Yeast. 2002 Jun 15;19(8):699-702.
Sequence change(s)
Insertion of a G at 270024.
Old: 270000 TACTATTGATGGAAATGAGGACTGG-TCATGGGGCGCAATGGAGTGAAGTAATATATACT 270058
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
New: 270000 TACTATTGATGGAAATGAGGACTGGGTCATGGGGCGCAATGGAGTGAAGTAATATATACT 270059
Update 7
2004-02-05, submitted by Dianna
Source
- Belenkiy R, Haefele A, Eisen MB, Wohlrab H. The yeast mitochondrial transport proteins: new sequences and consensus residues, lack of direct relation between consensus residues and transmembrane helices, expression patterns of the transport protein genes, and protein-protein interactions with other proteins. Biochim Biophys Acta. 2000 Jul 31;1467(1):207-18.
- Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature. 2003 May 15;423(6937):241-54.
- Brachat S, Dietrich FS, Voegeli S, Zhang Z, Stuart L, Lerch A, Gates K, Gaffney T, Philippsen P. Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol. 2003;4(7):R45.
- Sequence verification in S288c by SGD
Sequence change(s)
- Insertion of a single G nt at position 242182
New: 242152 TAAAGACTGGTTTACAATTGCAACCGAAGGGTACCGCTTTCGAAATCATTTTACCTCAGA 242211
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Old: 242152 TAAAGACTGGTTTACAATTGCAACCGAAGG-TACCGCTTTCGAAATCATTTTACCTCAGA 242210
Consequences
- YFR045W was extended 320 nt at the 5' end, altering the the N-terminus
and increasing the size of the predicted protein from 537 to 858 amino
acids.
Update 8
2004-02-05, submitted by Dianna
Source
- Hui-fen Kuo and Eric Richards, personal communication to SGD
- Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature. 2003 May 15;423(6937):241-54.
- Brachat S, Dietrich FS, Voegeli S, Zhang Z, Stuart L, Lerch A, Gates K, Gaffney T, Philippsen P. Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol. 2003;4(7):R45.
- Sequence verification in S288c by SGD
Sequence change(s)
- Deletion of G nt at position 231670
New: 231648 AAAAATTGGCGTTAAATGAAGG-TTCTTTTTTGAAGGCAAA 231687
|||||||||||||||||||||| ||||||||||||||||||
Old: 231648 AAAAATTGGCGTTAAATGAAGGGTTCTTTTTTGAAGGCAAA 231688
Consequences
- YFR038W was extended 226 nt at the 3' end, altering the C-terminus
and increasing the size of the predicted protein from 778 to 853 amino acids.
Return to Saccharomyces Genome Database