PIS1/YPR113W Single Page Format |
|
Contents
- Names and Identifiers
- GO Annotations
- Pathways
- Summary Paragraph
- Mutant Phenotypes
- Interactions
- Homologs
- Protein Info (physical properties, transcript info)
- PDB Homologs (protein structure info)
- Motifs
- Genome-wide Expression
(and other large-scale analyses)- Locus History (misc. notes)
- Sequence Retrieval and Analysis
- Map and Displays
- Localization
- Community Annotation
- Literature Guide
Sequence Coordinates
  ChrXVI: 752255 to 752917
CDS: 752255 - 752917Click on map for expanded view
SGD ORF map GBrowse SGD Locus Page
| ||||||||
|---|---|---|---|---|---|---|---|---|
| Standard Name | Systematic Name | Alias | Feature Type | SGDID | ||||
| PIS1 | YPR113W |   | ORF, Verified | S000006317 | ||||
| Description | ||||||||
| Phosphatidylinositol synthase, required for biosynthesis of phosphatidylinositol, which is a precursor for polyphosphoinositides, sphingolipids, and glycolipid anchors for some of the plasma membrane proteins | ||||||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| |||||||||
|---|---|---|---|---|---|---|---|---|---|
| phosphatidylinositol biosynthesis superpathway of phospholipid biosynthesis | |||||||||
| |||||||||
|---|---|---|---|---|---|---|---|---|---|
| No summary paragraph available | |||||||||
| |||||||||
|---|---|---|---|---|---|---|---|---|---|
| |||||||||
| |||||||
|---|---|---|---|---|---|---|---|
| Phenotype page for PIS1/YPR113W | |||||||
| |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Interaction page for PIS1/YPR113W | |||||||||
| |||||||||
|---|---|---|---|---|---|---|---|---|---|
| |||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10 20 30 40 50
| | | | |
MSSNSTPEKVTAEHVLWYIPNKIGYVRVITAALSFFVMKNHPTAFTWLYS
TSCLLDALDGTMARKYNQVSSLGAVLDMVTDRSSTAGLMCFLCVQYPQWC
VFFQLMLGLDITSHYMHMYASLSAGKTSHKSVGEGESRLLHLYYTRRDVL
FTICAFNELFYAGLYLQLFSNSATFGKWTTIISFPGYVFKQTANVVQLKR
AALILADNDAKNANEKNKTY*
| ||||||||||||||||||||||||||||
| |||||||||
|---|---|---|---|---|---|---|---|---|---|
| No protein structure information available. | |||||||||
| |||||
|---|---|---|---|---|---|
| You can also search multiple datasets simultaneously using Expression Connection for expression studies or Function Junction for other large scale analyses. | |||||
| ||||
|---|---|---|---|---|
| Nomenclature History |
|---|
| Standard Name | Reference |
|---|---|
| PIS1 | SGD (2007) Information without a citation in SGD |
| Mapping Notes |
| |||||
|---|---|---|---|---|---|
| Sequence Type | Output Format | ||||
| Genomic DNA | GCG | FASTA | NoHeader | ||||
| Genomic DNA with 1 kb up and downstream | GCG | FASTA | NoHeader | ||||
| DNA coding sequence (without introns, without flanking regions) | GCG | FASTA | NoHeader | ||||
| Protein Translation of ORF | GCG | FASTA | NoHeader | ||||
| 6-Frame Translation(with Restriction Map) | GCG | ||||
| Restriction Fragment Sizes | GCG | ||||
| Sequence from other databases | |
|---|---|
| Sequence ID | Source |
| YPR113W | SGD Systematic Sequence |
| 856229 | NCBI: Gene ID |
| NP_015438.1 | NCBI: RefSeq protein version ID |
| NP_015438.1 | NCBI: RefSeq protein version ID |
| 6325370 | NCBI: NCBI protein GI |
| ||||||||
|---|---|---|---|---|---|---|---|---|
| Physical, Genetic Maps: | Chromosomal Feature Map | GBrowse | Combined Physical and Genetic Map | Genetic Distance vs. Physical Distance Ratios | ||||
| Similarity Viewers: | Synteny Viewer | Genomic Stripe View | SAGE Results Map |   | ||||
| |||||||||
|---|---|---|---|---|---|---|---|---|---|
| |||||||||
|---|---|---|---|---|---|---|---|---|---|
| No community annotation available. | |||||||||
| ||||||
|---|---|---|---|---|---|---|
| Topics | Reference | Other Genes Addressed | 42 curated references; 0 references not yet curated | |||
| Strains/Constructs Techniques and Reagents | Clark KM, et al. (2009) Purification of Transmembrane Proteins from Saccharomyces cerevisiae for X-ray Crystallography. Protein Expr Purif | |AAC1 |AAC3 |ADP1 |ALG3 |ALG7 |BOR1 |CHO1 |DGA1 |DPP1 |ENA5 |EPT1 |GPT2 |LPP1 |NFT1 |MORE | ||||
| Reviews | Eide DJ (2009) Homeostatic and Adaptive Responses to Zinc Deficiency in Saccharomyces cerevisiae. J Biol Chem 284(28):18565-9 | |ADH1 |ADH2 |ADH3 |ADH4 |CHO1 |CHO2 |CKI1 |CTT1 |DPP1 |EKI1 |FET4 |HPF1 |MCD4 |MET14 |MORE | ||||
| Regulation of | Guzinska K, et al. (2009) Role of Plc1p in regulation of Mcm1p-dependent genes. FEMS Microbiol Lett 295(2):245-50 | |ARG82 |BAR1 |CDC6 |CLN3 |FAR1 |MCM1 |MF(ALPHA)1 |PLC1 |STE2 |STE3 | ||||
| Function/Process Mutants/Phenotypes Regulatory Role Strains/Constructs | Jani NM and Lopes JM (2009) Regulated transcription of the Saccharomyces cerevisiae phosphatidylinositol biosynthetic gene, PIS1, yields pleiotropic effects on phospholipid synthesis. FEMS Yeast Res 9(4):552-64 | |CHO1 |INO1 |INO2 | ||||
| Mutants/Phenotypes Strains/Constructs | Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 | |AAR2 |ABD1 |ABF1 |ACC1 |ACP1 |ADE13 |AFG2 |ALA1 |ALG1 |ALG13 |ALG14 |ALG2 |ALG7 |ALR1 |MORE | ||||
| Regulation of Transcription | Jani NM and Lopes JM (2008) Transcription regulation of the Saccharomyces cerevisiae PIS1 gene by inositol and the pleiotropic regulator, Ume6p. Mol Microbiol 70(6):1529-39 | |ASH1 |CTI6 |DEP1 |EAF3 |INO4 |PHO23 |RCO1 |RPD3 |RXT2 |RXT3 |SAP30 |SDS3 |SIN3 |UME1 |MORE | ||||
| Reviews | Carman GM and Han GS (2007) Regulation of phospholipid synthesis in Saccharomyces cerevisiae by zinc depletion. Biochim Biophys Acta 1771(3):322-30 | |CDS1 |CHO1 |CHO2 |CKI1 |CPT1 |CRD1 |DPP1 |EKI1 |EPT1 |INM1 |INO1 |OPI1 |OPI3 |PAH1 |MORE | ||||
| Reviews Transcription | Chen M, et al. (2007) Transcriptional regulation of yeast phospholipid biosynthetic genes. Biochim Biophys Acta 1771(3):310-21 | |INO1 |INO2 |INO4 |OPI1 | ||||
| Cross-species Expression Non-Fungal Related Genes/Proteins | Wengelnik K and Vial HJ (2007) Characterisation of the phosphatidylinositol synthase gene of Plasmodium species. Res Microbiol 158(1):51-9 | |||||
| DNA/RNA Sequence Features RNA Levels and Processing Strains/Constructs | Iverson S, et al. (2006) Expression of the Saccharomyces cerevisiae PIS1 gene is modulated by multiple ATGs in the promoter. Biochem Biophys Res Commun 350(1):91-6 | |||||
| Genetic Interactions Mutants/Phenotypes Regulation of Strains/Constructs Transcription | Kaliszewski P, et al. (2006) Enhanced levels of Pis1p (phosphatidylinositol synthase) improve the growth of Saccharomyces cerevisiae cells deficient in Rsp5 ubiquitin ligase. Biochem J 395(1):173-81 | |INO1 |RSP5 | ||||
| Cellular Location | Reinders J, et al. (2006) Toward the complete yeast mitochondrial proteome: multidimensional separation techniques for mitochondrial proteomics. J Proteome Res 5(7):1543-54 | |AAC1 |AAC3 |AAT1 |ABC1 |ABF2 |ACC1 |ACH1 |ACK1 |ACN9 |ACO1 |ACO2 |ACP1 |ACS1 |ADH3 |MORE | ||||
| Reviews | Carman GM (2005) Regulation of phospholipid synthesis in yeast by zinc. Biochem Soc Trans 33(Pt 5):1150-3 | |CHO1 |DPP1 |INO2 |INO4 |OPI1 | ||||
| DNA/RNA Sequence Features Function/Process RNA Levels and Processing Regulation of Strains/Constructs Transcription | Gardocki ME, et al. (2005) Genomic analysis of PIS1 gene expression. Eukaryot Cell 4(3):604-14 | |AAD4 |ACB1 |ACE2 |ADH2 |APT1 |ATG17 |ATG19 |ATG27 |ATG29 |BAS1 |CIK1 |COQ4 |CPD1 |CPS1 |MORE | ||||
| Reviews | Gardocki ME, et al. (2005) Phosphatidylinositol biosynthesis: biochemistry and regulation. Biochim Biophys Acta 1735(2):89-100 | |||||
| Regulation of Transcription | Han SH, et al. (2005) Regulation of the PIS1-encoded phosphatidylinositol synthase in Saccharomyces cerevisiae by zinc. J Biol Chem 280(32):29017-24 | |INO2 |INO4 |OPI1 |ZAP1 |ZRT1 |ZRT2 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Loewen CJ, et al. (2004) Phospholipid metabolism regulated by a transcription factor sensing phosphatidic acid. Science 304(5677):1644-7 | |OPI1 |SCS2 |SPO14 | ||||
| DNA/RNA Sequence Features Mutants/Phenotypes Regulation of Strains/Constructs Transcription | Gardocki ME and Lopes JM (2003) Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site. J Biol Chem 278(40):38646-52 | |ROX1 | ||||
| Function/Process Mutants/Phenotypes Non-Fungal Related Genes/Proteins Strains/Constructs | Seron K, et al. (2000) Molecular cloning, functional complementation in Saccharomyces cerevisiae and enzymatic properties of phosphatidylinositol synthase from the protozoan parasite Toxoplasma gondii. Eur J Biochem 267(22):6571-9 | |||||
| Cross-species Expression Non-Fungal Related Genes/Proteins | Xue HW, et al. (2000) Cloning of Arabidopsis thaliana phosphatidylinositol synthase and functional expression in the yeast pis mutant. Plant Mol Biol 42(5):757-64 | |||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Mazhari-Tabrizi R, et al. (1999) Chromosomal promoter replacement in Saccharomyces cerevisiae: construction of conditional lethal strains for the cloning of glycosyltransferases from various organisms. Glycoconj J 16(11):673-9 | |ALG1 |ALG7 |DPM1 |GAA1 |GPI2 |SEC59 |SPT14 |WBP1 | ||||
| Reviews | Daum G, et al. (1998) Biochemistry, cell biology and molecular biology of lipids of Saccharomyces cerevisiae. Yeast 14(16):1471-510 | |ACC1 |ACP1 |AUR1 |CDS1 |CEM1 |CHO1 |CHO2 |CKI1 |CPT1 |CRD1 |CSG2 |DPL1 |DPP1 |EPT1 |MORE | ||||
| Function/Process Fungal Related Genes/Proteins Non-Fungal Related Genes/Proteins Protein Sequence Features | Williams JG and McMaster CR (1998) Scanning alanine mutagenesis of the CDP-alcohol phosphotransferase motif of Saccharomyces cerevisiae cholinephosphotransferase. J Biol Chem 273(22):13482-7 | |CHO1 |CPT1 |EPT1 | ||||
| Reviews | Nikawa J and Yamashita S (1997) Phosphatidylinositol synthase from yeast. Biochim Biophys Acta 1348(1-2):173-8 | |||||
| RNA Levels and Processing Regulation of Transcription | Shen H and Dowhan W (1997) Regulation of phospholipid biosynthetic enzymes by the level of CDP-diacylglycerol synthase activity. J Biol Chem 272(17):11215-20 | |CDS1 |CHO1 |INO1 |INO2 |OPI1 | ||||
| DNA/RNA Sequence Features RNA Levels and Processing Regulation of Transcription | Anderson MS and Lopes JM (1996) Carbon source regulation of PIS1 gene expression in Saccharomyces cerevisiae involves the MCM1 gene and the two-component regulatory gene, SLN1. J Biol Chem 271(43):26596-601 | |INO2 |MCM1 |OPI1 |SLN1 | ||||
| Function/Process Fungal Related Genes/Proteins | Antonsson BE and Klig LS (1996) Candida albicans phosphatidylinositol synthase has common features with both Saccharomyces cerevisiae and mammalian phosphatidylinositol synthases. Yeast 12(5):449-56 | |||||
| Reviews | Greenberg ML and Lopes JM (1996) Genetic regulation of phospholipid biosynthesis in Saccharomyces cerevisiae. Microbiol Rev 60(1):1-20 | |HNM1 |INO1 |ITR1 |PCT1 |PSD1 |PSD2 | ||||
| Mapping | Anderson MS, et al. (1995) Physical map locations of the phospholipid biosynthetic structural and regulatory genes of Saccharomyces cerevisiae. Yeast 11(2):187-90 | |CHO2 |INO1 |OPI3 |UME6 | ||||
| Cellular Location | Gaigg B, et al. (1995) Characterization of a microsomal subfraction associated with mitochondria of the yeast, Saccharomyces cerevisiae. Involvement in synthesis and import of phospholipids into mitochondria. Biochim Biophys Acta 1234(2):214-20 | |CHO1 | ||||
| Cellular Location | Leber A, et al. (1995) Phospholipid-synthesizing enzymes in Golgi membranes of the yeast, Saccharomyces cerevisiae. FEBS Lett 377(2):271-4 | |CPT1 |GDA1 | ||||
| Protein-Nucleic Acid Interactions RNA Levels and Processing Regulation of Transcription | Kuo MH and Grayhack E (1994) A library of yeast genomic MCM1 binding sites contains genes involved in cell cycle control, cell wall and membrane structure, and metabolism. Mol Cell Biol 14(1):348-59 | |CCP1 |CLB2 |CLN3 |DIT1 |DIT2 |FAR1 |GFA1 |HSP150 |MCM1 |MET2 |PCK1 |PMA1 | ||||
| Reviews | Paltauf F, et al. (1992) "Regulation and compartmentalization of lipid synthesis in yeast." Pp. 415-500 in The Molecular and Cellular Biology of the Yeast Saccharomyces: Gene Expression, edited by Jones EW, Pringle JR and Broach JR. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press | |ACC1 |ACH1 |CDS1 |CHO1 |CHO2 |CKI1 |CTR1 |ERG1 |ERG10 |ERG11 |ERG12 |ERG13 |ERG2 |ERG20 |MORE | ||||
| Function/Process Protein Processing/Modification/Regulation Substrates/Ligands/Cofactors | Bae-Lee M and Carman GM (1990) Regulation of yeast phosphatidylserine synthase and phosphatidylinositol synthase activities by phospholipids in Triton X-100/phospholipid mixed micelles. J Biol Chem 265(13):7221-6 | |CHO1 | ||||
| Cellular Location Techniques and Reagents | Kinney AJ and Carman GM (1990) Enzymes of phosphoinositide synthesis in secretory vesicles destined for the plasma membrane in Saccharomyces cerevisiae. J Bacteriol 172(7):4115-7 | |CDS1 |PIK1 | ||||
| Protein Physical Properties Protein Processing/Modification/Regulation Regulation of Substrates/Ligands/Cofactors | Kelley MJ, et al. (1988) Regulation of phospholipid biosynthesis in Saccharomyces cerevisiae by inositol. Inositol is an inhibitor of phosphatidylserine synthase activity. J Biol Chem 263(34):18078-85 | |CHO1 | ||||
| Function/Process Protein Physical Properties Strains/Constructs Techniques and Reagents | Nikawa J, et al. (1988) Expression of the Saccharomyces cerevisiae PIS gene and synthesis of phosphatidylinositol in Escherichia coli. J Bacteriol 170(10):4727-31 | |||||
| Cellular Location DNA/RNA Sequence Features Fungal Related Genes/Proteins Mutants/Phenotypes Non-Fungal Related Genes/Proteins Protein Sequence Features RNA Levels and Processing Strains/Constructs | Nikawa J, et al. (1987) Primary structure and disruption of the phosphatidylinositol synthase gene of Saccharomyces cerevisiae. J Biol Chem 262(10):4876-81 | |||||
| Function/Process Protein Physical Properties Substrates/Ligands/Cofactors Techniques and Reagents | Fischl AS, et al. (1986) Phosphatidylinositol synthase from Saccharomyces cerevisiae. Reconstitution, characterization, and regulation of activity. J Biol Chem 261(7):3178-83 | |||||
| Cellular Location | Kuchler K, et al. (1986) Subcellular and submitochondrial localization of phospholipid-synthesizing enzymes in Saccharomyces cerevisiae. J Bacteriol 165(3):901-10 | |CDS1 |CHO1 |CPT1 |GAT1 |PSD1 |PSD2 | ||||
| DNA/RNA Sequence Features Function/Process Protein Physical Properties Protein Sequence Features Strains/Constructs | Nikawa J and Yamashita S (1984) Molecular cloning of the gene encoding CDPdiacylglycerol-inositol 3-phosphatidyl transferase in Saccharomyces cerevisiae. Eur J Biochem 143(2):251-6 | |||||
| Function/Process Mapping Mutants/Phenotypes Protein Physical Properties Strains/Constructs | Nikawa J and Yamashita S (1982) Yeast mutant defective in synthesis of phosphatidylinositol. Isolation and characterization of a CDPdiacylglycerol--inositol 3-phosphatidyltransferase Km mutant. Eur J Biochem 125(2):445-51 | |CHO1 |HOM3 |URA3 | ||||
Return to SGD |