NDC1/YML031W Single Page Format |
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Contents
- Names and Identifiers
- GO Annotations
- Pathways
- Summary Paragraph
- Mutant Phenotypes
- Interactions
- Homologs
- Protein Info (physical properties, transcript info)
- PDB Homologs (protein structure info)
- Motifs
- Genome-wide Expression
(and other large-scale analyses)- Locus History (misc. notes)
- Sequence Retrieval and Analysis
- Map and Displays
- Localization
- Community Annotation
- Literature Guide
Sequence Coordinates
  ChrXIII: 214189 to 216156
CDS: 214189 - 216156
Genetic position: -18 cM
Genetic Map DataClick on map for expanded view
SGD ORF map GBrowse SGD Locus Page
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| Standard Name | Systematic Name | Alias | Feature Type | SGDID | ||||
| NDC1 | YML031W |   | ORF, Verified | S000004493 | ||||
| Description | ||||||||
| Nuclear envelope protein with multiple putative transmembrane domains, required for nuclear pore complex assembly and spindle pole body duplication; required for meiosis II | ||||||||
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| No pathways available | |||||||||
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| No summary paragraph available | |||||||||
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| Phenotype page for NDC1/YML031W | |||||||
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| Interaction page for NDC1/YML031W | |||||||||
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MIQTPRELLNPRYTYHTIFSDVCKTRFNHLVTRLFFICSIIQTVVISLLA
LPHSPLWELALAFIPNILALNLVSLLIIVTRKNYMHVKNFGFANSLTFIL
GQLLSVKFLVYQGVYSMGSILLSFVLGVVFGRGGSGWKPYYKLFIWLVVP
TIYNLQHHVTDADKLSFNCENFFQAPQDYVLERVKRIMEKSVILSVISMF
VLPIFTTVFFSRQKSGLFDSFTNGVLAVTNLLIISCIIFITFEFINIAFD
AHMSIGCLHKGKLISNLSSTPMETLLSGLSADKPFTRLTAYQELAYRATS
LDPSLRAPIYHSKFRSSSGNTWSLILNECLKTIQINNEKVVQYLRSVQDL
GGSATARHKKKVENLDYMYENGKLTSANERLFGNRPSMMAPLRDNGLLDE
SPNRLRVRTDDSVLLNRGNKKRHRSSYYDNDLDETTQTFNGSIFTHETTF
MTAMRLMLKKLKNSIMSFIFPSYAERQSSDESDNYRLLPNGSNKAQISII
DIWSISKKRQAEKLVPLPICHANSVVALTGLLIRSKTEDPKGGIIASVGD
ILKTLERSICALGEFADWDPESMAYTAFQTQRTAQDRVQQDSEDEDSMKD
TTDMISVLYQLSTSAFMEIVLEYNVALNDVYLDADVAKLANWFLEVYASG
NPNAT*
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| No protein structure information available. | |||||||||
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| You can also search multiple datasets simultaneously using Expression Connection for expression studies or Function Junction for other large scale analyses. | |||||
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| Nomenclature History |
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| Standard Name | Reference |
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| NDC1 | Hoyt, A. (1989) Personal Communication, Mortimer Map Edition 10 |
| Mapping Notes |
| Date | Note |
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| 1989-10-01 | Edition 10: ndc1 is physically adjacent to rad52Mortimer RK, et al. (1989) Genetic map of Saccharomyces cerevisiae, edition 10. Yeast 5(5):321-403 ![]() |
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| Sequence Type | Output Format | ||||
| Genomic DNA | GCG | FASTA | NoHeader | ||||
| Genomic DNA with 1 kb up and downstream | GCG | FASTA | NoHeader | ||||
| DNA coding sequence (without introns, without flanking regions) | GCG | FASTA | NoHeader | ||||
| Protein Translation of ORF | GCG | FASTA | NoHeader | ||||
| 6-Frame Translation(with Restriction Map) | GCG | ||||
| Restriction Fragment Sizes | GCG | ||||
| Sequence from other databases | |
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| Sequence ID | Source |
| YML031W | SGD Systematic Sequence |
| 854977 | NCBI: Gene ID |
| NP_013681.1 | NCBI: RefSeq protein version ID |
| NP_013681.1 | NCBI: RefSeq protein version ID |
| 6323610 | NCBI: NCBI protein GI |
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| Physical, Genetic Maps: | Chromosomal Feature Map | GBrowse | Combined Physical and Genetic Map | Genetic Distance vs. Physical Distance Ratios | ||||
| Similarity Viewers: | Synteny Viewer | Genomic Stripe View | SAGE Results Map |   | ||||
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| No community annotation available. | |||||||||
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| Topics | Reference | Other Genes Addressed | 34 curated references; 0 references not yet curated | |||
| Cellular Location Regulation of | Makio T, et al. (2009) The nucleoporins Nup170p and Nup157p are essential for nuclear pore complex assembly. J Cell Biol 185(3):459-73 | |APQ12 |ASM4 |GLE1 |KAP104 |KAP123 |KAP95 |MLP1 |NAB2 |NUP1 |NUP100 |NUP133 |NUP157 |NUP159 |NUP170 |MORE | ||||
| Cellular Location Protein-protein Interactions Strains/Constructs | Onischenko E, et al. (2009) Role of the Ndc1 interaction network in yeast nuclear pore complex assembly and maintenance. J Cell Biol 185(3):475-91 | |ASM4 |MPS3 |NPL3 |NUP133 |NUP157 |NUP170 |NUP188 |NUP2 |NUP53 |NUP82 |POM152 |POM34 | ||||
| Reviews | Rexach M (2009) Piecing together nuclear pore complex assembly during interphase. J Cell Biol 185(3):377-9 | |ASM4 |NIC96 |NUP157 |NUP170 |NUP188 |NUP53 |NUP82 |NUP84 |POM152 |POM34 |RTN1 |YOP1 | ||||
| Cellular Location Genetic Interactions Mutants/Phenotypes Strains/Constructs | Sezen B, et al. (2009) The SESA network links duplication of the yeast centrosome with the protein translation machinery. Genes Dev 23(13):1559-70 | |ASC1 |BBP1 |BFR1 |BRE5 |CDC33 |EAP1 |GCN4 |MLP1 |MLP2 |MPS2 |NIP1 |PGK1 |POM152 |POM34 |MORE | ||||
| Mutants/Phenotypes Strains/Constructs | Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 | |AAR2 |ABD1 |ABF1 |ACC1 |ACP1 |ADE13 |AFG2 |ALA1 |ALG1 |ALG13 |ALG14 |ALG2 |ALG7 |ALR1 |MORE | ||||
| Protein-protein Interactions | Patel SS and Rexach MF (2008) Discovering novel interactions at the nuclear pore complex using bead halo: a rapid method for detecting molecular interactions of high and low affinity at equilibrium. Mol Cell Proteomics 7(1):121-31 | |ASM4 |GLE1 |KAP95 |NIC96 |NSP1 |NUP1 |NUP100 |NUP116 |NUP53 |NUP60 |NUP84 |POM34 |SEH1 |SRM1 |MORE | ||||
| Cellular Location Computational analysis Protein Physical Properties Protein-protein Interactions Protein/Nucleic Acid Structure | Alber F, et al. (2007) Determining the architectures of macromolecular assemblies. Nature 450(7170):683-94 | |ASM4 |GLE1 |GLE2 |NIC96 |NSP1 |NUP1 |NUP100 |NUP116 |NUP120 |NUP133 |NUP145 |NUP157 |NUP159 |NUP170 |MORE | ||||
| Cellular Location Evolution Protein/Nucleic Acid Structure | Alber F, et al. (2007) The molecular architecture of the nuclear pore complex. Nature 450(7170):695-701 | |ASM4 |GLE1 |GLE2 |NIC96 |NSP1 |NUP1 |NUP100 |NUP116 |NUP120 |NUP133 |NUP145 |NUP157 |NUP159 |NUP170 |MORE | ||||
| Large-scale protein localization | Lind K and Norbeck J (2007) Immuno-qPCR detection of the tandem affinity purification (TAP)-tag as a sensitive and accurate tool suitable for large-scale protein quantification. Proteomics 7(24):4414-23 | |ARH1 |CDC13 |CDC23 |CDC27 |CLF1 |CTT1 |DAK1 |ERG8 |FPS1 |HOR2 |HXK2 |HXT1 |HXT7 |MCD1 |MORE | ||||
| Cellular Location Function/Process Protein Sequence Features Protein-protein Interactions | Patel SS, et al. (2007) Natively unfolded nucleoporins gate protein diffusion across the nuclear pore complex. Cell 129(1):83-96 | |GLE1 |GLE2 |KAP95 |NIC96 |NSP1 |NUP1 |NUP100 |NUP116 |NUP120 |NUP157 |NUP159 |NUP170 |NUP192 |NUP2 |MORE | ||||
| Reviews | Taddei A (2007) Active genes at the nuclear pore complex. Curr Opin Cell Biol 19(3):305-310 | |ASM4 |CDC31 |DBP5 |GAL1 |GFD1 |GLE1 |GLE2 |HSP104 |HTZ1 |INO1 |KAP120 |KAP122 |KAP123 |KAP95 |MORE | ||||
| Cellular Location Function/Process Genetic Interactions Mutants/Phenotypes Protein-protein Interactions Strains/Constructs | Araki Y, et al. (2006) The Saccharomyces cerevisiae spindle pole body (SPB) component Nbp1p is required for SPB membrane insertion and interacts with the integral membrane proteins Ndc1p and Mps2p. Mol Biol Cell 17(4):1959-70 | |BBP1 |CDC31 |MPS1 |MPS2 |MPS3 |NBP1 |SPC110 |SPC42 | ||||
| Evolution Fungal Related Genes/Proteins | De Hertogh B, et al. (2006) Emergence of species-specific transporters during evolution of the hemiascomycete phylum. Genetics 172(2):771-81 | |AAC1 |AAC3 |ACS2 |ADP1 |ADY2 |AGC1 |AGP1 |AGP2 |AGP3 |ALP1 |ALR1 |ALR2 |ANT1 |AQR1 |MORE | ||||
| Computational analysis Non-Fungal Related Genes/Proteins Protein Sequence Features Protein/Nucleic Acid Structure Strains/Constructs | Devos D, et al. (2006) Simple fold composition and modular architecture of the nuclear pore complex. Proc Natl Acad Sci U S A 103(7):2172-7 | |ASM4 |NIC96 |NSP1 |NUP1 |NUP100 |NUP116 |NUP120 |NUP133 |NUP145 |NUP157 |NUP159 |NUP170 |NUP188 |NUP192 |MORE | ||||
| Cellular Location Function/Process Non-Fungal Related Genes/Proteins Protein Sequence Features | Lau CK, et al. (2006) Topology of yeast Ndc1p: predictions for the human NDC1/NET3 homologue. Anat Rec A Discov Mol Cell Evol Biol 288(7):681-94 | |||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Madrid AS, et al. (2006) The role of the integral membrane nucleoporins Ndc1p and Pom152p in nuclear pore complex assembly and function. J Cell Biol 173(3):361-71 | |ASM4 |NPL3 |NUP159 |NUP60 |POM152 |POM34 | ||||
| Non-Fungal Related Genes/Proteins | Mansfeld J, et al. (2006) The conserved transmembrane nucleoporin NDC1 is required for nuclear pore complex assembly in vertebrate cells. Mol Cell 22(1):93-103 | |||||
| Non-Fungal Related Genes/Proteins | Stavru F, et al. (2006) NDC1: a crucial membrane-integral nucleoporin of metazoan nuclear pore complexes. J Cell Biol 173(4):509-19 | |||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Lau CK, et al. (2004) A novel allele of Saccharomyces cerevisiae NDC1 reveals a potential role for the spindle pole body component Ndc1p in nuclear pore assembly. Eukaryot Cell 3(2):447-58 | |NIC96 |NUP49 | ||||
| Protein Physical Properties Protein Sequence Features | Denning DP, et al. (2003) Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded. Proc Natl Acad Sci U S A 100(5):2450-5 | |ASM4 |CDC31 |GLE1 |GLE2 |NIC96 |NSP1 |NUP1 |NUP100 |NUP116 |NUP120 |NUP133 |NUP145 |NUP157 |NUP159 |MORE | ||||
| Cellular Location Genetic Interactions Mutants/Phenotypes Strains/Constructs | McBratney S and Winey M (2002) Mutant membrane protein of the budding yeast spindle pole body is targeted to the endoplasmic reticulum degradation pathway. Genetics 162(2):567-78 | |CUE1 |HRD1 |MPS2 |UBC6 |UBC7 | ||||
| Cellular Location Genetic Interactions Strains/Constructs | Marelli M, et al. (2001) A link between the synthesis of nucleoporins and the biogenesis of the nuclear envelope. J Cell Biol 153(4):709-24 | |ASM4 |NUP170 |NUP53 |POM152 |PSE1 | ||||
| Reviews | Vasu SK and Forbes DJ (2001) Nuclear pores and nuclear assembly. Curr Opin Cell Biol 13(3):363-75 | |ASM4 |CDC31 |GLE1 |GLE2 |MLP1 |MLP2 |NIC96 |NSP1 |NUP1 |NUP100 |NUP116 |NUP120 |NUP133 |NUP145 |MORE | ||||
| Reviews | Adams IR and Kilmartin JV (2000) Spindle pole body duplication: a model for centrosome duplication? Trends Cell Biol 10(8):329-35 | |BBP1 |CDC31 |CMD1 |CNM67 |KAR1 |MPS2 |NUD1 |SPC110 |SPC29 |SPC42 |SPC72 |SPC97 |SPC98 |TUB4 | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Chial HJ, et al. (2000) Yeast Eap1p, an eIF4E-associated protein, has a separate function involving genetic stability. Curr Biol 10(23):1519-22 | |CDC33 |EAP1 | ||||
| Cellular Location Protein Physical Properties Strains/Constructs Techniques and Reagents | Rout MP, et al. (2000) The yeast nuclear pore complex: composition, architecture, and transport mechanism. J Cell Biol 148(4):635-51 | |AIM4 |ASM4 |BMS1 |BUD20 |CTR9 |GLE1 |GLE2 |HAS1 |KAP120 |KAP122 |KAP123 |KAP95 |KRR1 |MEX67 |MORE | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Chial HJ, et al. (1999) Altered dosage of the Saccharomyces cerevisiae spindle pole body duplication gene, NDC1, leads to aneuploidy and polyploidy. Proc Natl Acad Sci U S A 96(18):10200-5 | |||||
| Cellular Location Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs Techniques and Reagents | Chial HJ, et al. (1998) Saccharomyces cerevisiae Ndc1p is a shared component of nuclear pore complexes and spindle pole bodies. J Cell Biol 143(7):1789-800 | |NUP49 |POM152 |SPC42 | ||||
| Fungal Related Genes/Proteins | West RR, et al. (1998) cut11(+): A gene required for cell cycle-dependent spindle pole body anchoring in the nuclear envelope and bipolar spindle formation in Schizosaccharomyces pombe. Mol Biol Cell 9(10):2839-55 | |||||
| Reviews | Sobel SG (1997) Mini review: mitosis and the spindle pole body in Saccharomyces cerevisiae. J Exp Zool 277(2):120-38 | |CDC31 |CIK1 |DYN1 |KAR1 |KAR3 |MPS1 |MPS2 |NUM1 |SPC110 |SPC42 |TUB1 |TUB2 |TUB4 | ||||
| Reviews | Winsor B and Schiebel E (1997) Review: an overview of the Saccharomyces cerevisiae microtubule and microfilament cytoskeleton. Yeast 13(5):399-434 | |ASE1 |BBP1 |BIK1 |BIM1 |CAP1 |CAP2 |CBC2 |CDC31 |CEN3 |CEN5 |CNM67 |DSK2 |DYN1 |DYN2 |MORE | ||||
| Reviews | Winey M and Byers B (1993) Assembly and functions of the spindle pole body in budding yeast. Trends Genet 9(9):300-4 | |CDC31 |CIK1 |CIN8 |KAR1 |MPS1 |SPC110 |SPC42 |SPC98 | ||||
| Cell Cycle Phase Involved Cellular Location Function/Process Mutants/Phenotypes Protein Physical Properties Protein Sequence Features Strains/Constructs Techniques and Reagents | Winey M, et al. (1993) NDC1: a nuclear periphery component required for yeast spindle pole body duplication. J Cell Biol 122(4):743-51 | |CDC34 | ||||
| Cell Cycle Phase Involved Function/Process Mutants/Phenotypes Strains/Constructs | Thomas JH and Botstein D (1986) A gene required for the separation of chromosomes on the spindle apparatus in yeast. Cell 44(1):65-76 | |CCS1 |RAD52 | ||||
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