LCB3/YJL134W Single Page Format |
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Contents
- Names and Identifiers
- GO Annotations
- Pathways
- Summary Paragraph
- Mutant Phenotypes
- Interactions
- Homologs
- Protein Info (physical properties, transcript info)
- PDB Homologs (protein structure info)
- Motifs
- Genome-wide Expression
(and other large-scale analyses)- Locus History (misc. notes)
- Sequence Retrieval and Analysis
- Map and Displays
- Localization
- Community Annotation
- Literature Guide
Sequence Coordinates
  ChrX: 158184 to 159413
CDS: 158184 - 159413Click on map for expanded view
SGD ORF map GBrowse SGD Locus Page
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| Standard Name | Systematic Name | Alias | Feature Type | SGDID | ||||
| LCB3 | YJL134W | LBP1, YSR2 | ORF, Verified | S000003670 | ||||
| Description | ||||||||
| Long-chain base-1-phosphate phosphatase with specificity for dihydrosphingosine-1-phosphate, regulates ceramide and long-chain base phosphates levels, involved in incorporation of exogenous long chain bases in sphingolipids | ||||||||
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| sphingolipid metabolism | |||||||||
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| Phenotype page for LCB3/YJL134W | |||||||
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| Interaction page for LCB3/YJL134W | |||||||||
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MVDGLNTSNIRKRARTLSNPNDFQEPNYLLDPGNHPSDHFRTRMSKFRFN
IREKLLVFTNNQSFTLSRWQKKYRSAFNDLYFTYTSLMGSHTFYVLCLPM
PVWFGYFETTKDMVYILGYSIYLSGFFKDYWCLPRPRAPPLHRITLSEYT
TKEYGAPSSHTANATGVSLLFLYNIWRMQESSVMVQLLLSCVVLFYYMTL
VFGRIYCGMHGILDLVSGGLIGIVCFIVRMYFKYRFPGLRIEEHWWFPLF
SVGWGLLLLFKHVKPVDECPCFQDSVAFMGVVSGIECCDWLGKVFGVTLV
YNLEPNCGWRLTLARLLVGLPCVVIWKYVISKPMIYTLLIKVFHLKDDRN
VAARKRLEATHKEGASKYECPLYIGEPKIDILGRFIIYAGVPFTVVMCSP
VLFSLLNIA*
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| No protein structure information available. | |||||||||
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| You can also search multiple datasets simultaneously using Expression Connection for expression studies or Function Junction for other large scale analyses. | |||||
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| Nomenclature History |
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| Standard Name | Reference |
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| LCB3 | SGD (2007) Information without a citation in SGD |
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| Sequence Type | Output Format | ||||
| Genomic DNA | GCG | FASTA | NoHeader | ||||
| Genomic DNA with 1 kb up and downstream | GCG | FASTA | NoHeader | ||||
| DNA coding sequence (without introns, without flanking regions) | GCG | FASTA | NoHeader | ||||
| Protein Translation of ORF | GCG | FASTA | NoHeader | ||||
| 6-Frame Translation(with Restriction Map) | GCG | ||||
| Restriction Fragment Sizes | GCG | ||||
| Sequence from other databases | |
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| Sequence ID | Source |
| YJL134W | SGD Systematic Sequence |
| 853307 | NCBI: Gene ID |
| NP_012401.1 | NCBI: RefSeq protein version ID |
| NP_012401.1 | NCBI: RefSeq protein version ID |
| 6322327 | NCBI: NCBI protein GI |
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| Physical, Genetic Maps: | Chromosomal Feature Map | GBrowse | Combined Physical and Genetic Map | Genetic Distance vs. Physical Distance Ratios | ||||
| Similarity Viewers: | Synteny Viewer | Genomic Stripe View | SAGE Results Map |   | ||||
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| No community annotation available. | |||||||||
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| Topics | Reference | Other Genes Addressed | 35 curated references; 0 references not yet curated | |||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | DeLuna A, et al. (2008) Exposing the fitness contribution of duplicated genes. Nat Genet 40(5):676-81 | |GDH1 |GDH3 |ITR1 |ITR2 |NDE1 |NDE2 |YSR3 | ||||
| Reviews | Dickson RC (2008) Thematic Review Series: Sphingolipids. New insights into sphingolipid metabolism and function in budding yeast. J Lipid Res 49(5):909-21 | |AUR1 |CSG2 |CSH1 |DPL1 |FEN1 |IFA38 |IPT1 |ISC1 |LCB1 |LCB2 |LCB4 |LCB5 |LIP1 |PHS1 |MORE | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Brace JL, et al. (2007) SVF1 regulates cell survival by affecting sphingolipid metabolism in Saccharomyces cerevisiae. Genetics 175(1):65-76 | |DPL1 |LCB4 |SUR2 |SVF1 |YPK1 | ||||
| Reviews | Cowart LA and Obeid LM (2007) Yeast sphingolipids: recent developments in understanding biosynthesis, regulation, and function. Biochim Biophys Acta 1771(3):421-31 | |AUR1 |CSG2 |CSH1 |DPL1 |FEN1 |ISC1 |LAC1 |LAG1 |LCB1 |LCB2 |LCB4 |LCB5 |SUR1 |SUR4 |MORE | ||||
| Reviews | Kihara A, et al. (2007) Metabolism and biological functions of two phosphorylated sphingolipids, sphingosine 1-phosphate and ceramide 1-phosphate. Prog Lipid Res 46(2):126-44 | |DPL1 |LAC1 |LAG1 |LCB1 |LCB2 |LCB4 |LCB5 |LIP1 |SUR2 |TSC10 |TSC3 |YDC1 |YPC1 |YSR3 | ||||
| Non-Fungal Related Genes/Proteins | Le Stunff H, et al. (2007) Recycling of Sphingosine Is Regulated by the Concerted Actions of Sphingosine-1-phosphate Phosphohydrolase 1 and Sphingosine Kinase 2. J Biol Chem 282(47):34372-80 | |||||
| Reviews | Dickson RC, et al. (2006) Functions and metabolism of sphingolipids in Saccharomyces cerevisiae. Prog Lipid Res 45(6):447-65 | |ARV1 |AUR1 |CSH1 |DPL1 |FEN1 |IPT1 |LCB1 |LCB2 |LCB4 |LCB5 |NCR1 |PKH1 |PKH2 |SCS7 |MORE | ||||
| Reviews | Riezman H (2006) Organization and functions of sphingolipid biosynthesis in yeast. Biochem Soc Trans 34(3):367-369 | |AUR1 |CSG2 |DPL1 |IPT1 |LAC1 |LAG1 |LCB1 |LCB2 |LCB4 |LCB5 |LIP1 |SUR1 |SUR2 |TSC3 |MORE | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Gaigg B, et al. (2005) Synthesis of sphingolipids with very long chain fatty acids but not ergosterol is required for routing of newly synthesized plasma membrane ATPase to the cell surface of yeast. J Biol Chem 280(23):22515-22 | |ACB1 |ACC1 |ARE1 |ARE2 |AYR1 |CSG2 |DPL1 |ELO1 |ERG24 |ERG3 |ERG4 |ERG5 |FEN1 |HEM1 |MORE | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Sano T, et al. (2005) Regulation of the sphingoid long-chain base kinase Lcb4p by ergosterol and heme: studies in phytosphingosine-resistant mutants. J Biol Chem 280(44):36674-82 | |DPL1 |ERG2 |ERG3 |ERG4 |ERG5 |ERG6 |HAP1 |HEM14 |HMG1 |KES1 |LCB4 |PBP1 |PDR5 |TPS1 |MORE | ||||
| Non-Fungal Related Genes/Proteins Reviews | Saba JD and Hla T (2004) Point-counterpoint of sphingosine 1-phosphate metabolism. Circ Res 94(6):724-34 | |LCB4 |LCB5 |YSR3 | ||||
| Function/Process | Funato K, et al. (2003) Lcb4p is a key regulator of ceramide synthesis from exogenous long chain sphingoid base in Saccharomyces cerevisiae. J Biol Chem 278(9):7325-34 | |LCB4 |LCB5 | ||||
| Cellular Location Function/Process Protein Sequence Features Substrates/Ligands/Cofactors | Kihara A, et al. (2003) Transmembrane topology of sphingoid long-chain base-1-phosphate phosphatase, Lcb3p. Genes Cells 8(6):525-35 | |DPP1 |LPP1 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Kobayashi SD and Nagiec MM (2003) Ceramide/long-chain base phosphate rheostat in Saccharomyces cerevisiae: regulation of ceramide synthesis by Elo3p and Cka2p. Eukaryot Cell 2(2):284-94 | |CKA2 |SUR4 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Bagnat M and Simons K (2002) Cell surface polarization during yeast mating. Proc Natl Acad Sci U S A 99(22):14183-8 | |BUL1 |BUL2 |ERG6 |FIG1 |FUS1 |FUS2 |GAP1 |HXT2 |LCB1 |PRM1 |SHO1 |STE6 |TRE1 | ||||
| Reviews | Bagnat M and Simons K (2002) Lipid rafts in protein sorting and cell polarity in budding yeast Saccharomyces cerevisiae. Biol Chem 383(10):1475-80 | |AUR1 |CSG2 |IPT1 |LAC1 |LAG1 |LCB1 |LCB2 |LCB4 |LCB5 |SUR1 |SUR2 |TSC10 |YSR3 | ||||
| Function/Process | Ferguson-Yankey SR, et al. (2002) Mutant analysis reveals complex regulation of sphingolipid long chain base phosphates and long chain bases during heat stress in yeast. Yeast 19(7):573-86 | |DPL1 |LCB4 |LCB5 | ||||
| Reviews | Funato K, et al. (2002) Biosynthesis and trafficking of sphingolipids in the yeast Saccharomyces cerevisiae. Biochemistry 41(51):15105-14 | |ACB1 |AUR1 |CCC2 |CSG2 |DPL1 |ELO1 |FEN1 |FMP45 |IFA38 |IPT1 |ISC1 |LAC1 |LAG1 |LCB1 |MORE | ||||
| Alias Function/Process Genetic Interactions | Swain E, et al. (2002) Sterol-dependent regulation of sphingolipid metabolism in Saccharomyces cerevisiae. J Biol Chem 277(29):26177-84 | |CCC2 |ERG26 |SCS7 |SUR2 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Regulatory Role Strains/Constructs | Birchwood CJ, et al. (2001) Calcium influx and signaling in yeast stimulated by intracellular sphingosine 1-phosphate accumulation. J Biol Chem 276(15):11712-8 | |CCH1 |DPL1 |LCB4 |LCB5 |MID1 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Regulatory Role Strains/Constructs Substrates/Ligands/Cofactors | Zhang X, et al. (2001) Elevation of endogenous sphingolipid long-chain base phosphates kills Saccharomyces cerevisiae cells. Curr Genet 40(4):221-33 | |DPL1 |LCB4 |LCB5 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | de Groot PW, et al. (2001) A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae. Comp Funct Genomics 2(3):124-42 | |AAD4 |AIM22 |ALG12 |ALK2 |ARE2 |ARG2 |ARP5 |ASI2 |ATG4 |ATG9 |AVL9 |AVT1 |AVT4 |BFA1 |MORE | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs Techniques and Reagents | Kim S, et al. (2000) Accumulation of phosphorylated sphingoid long chain bases results in cell growth inhibition in Saccharomyces cerevisiae. Genetics 156(4):1519-29 | |DPL1 |LCB4 |LCB5 |SUR2 |YSR3 | ||||
| Alias Fungal Related Genes/Proteins Non-Fungal Related Genes/Proteins | Mandala SM, et al. (2000) Molecular cloning and characterization of a lipid phosphohydrolase that degrades sphingosine-1- phosphate and induces cell death. Proc Natl Acad Sci U S A 97(14):7859-64 | |YSR3 | ||||
| Alias Function/Process Substrates/Ligands/Cofactors Techniques and Reagents | Mao C and Obeid LM (2000) Yeast sphingosine-1-phosphate phosphatases: assay, expression, deletion, purification, and cellular localization by GFP tagging. Methods Enzymol 311:223-32 | |YSR3 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Zanolari B, et al. (2000) Sphingoid base synthesis requirement for endocytosis in Saccharomyces cerevisiae. EMBO J 19(12):2824-33 | |ACT1 |LCB1 |LCB4 |LCB5 |SLA2 |YSR3 | ||||
| Alias Function/Process Mutants/Phenotypes Strains/Constructs | Dickson RC and Lester RL (1999) Metabolism and selected functions of sphingolipids in the yeast Saccharomyces cerevisiae. Biochim Biophys Acta 1438(3):305-21 | |AUR1 |CSG2 |DPL1 |ERG2 |FAS2 |FEN1 |IPT1 |LCB1 |LCB2 |LCB4 |LCB5 |MSN2 |MSN4 |MSS4 |MORE | ||||
| Alias Cell Cycle Phase Involved Cellular Location Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Mao C, et al. (1999) The dihydrosphingosine-1-phosphate phosphatases of Saccharomyces cerevisiae are important regulators of cell proliferation and heat stress responses. Biochem J 342 Pt 3():667-75 | |YSR3 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Skrzypek MS, et al. (1999) Analysis of phosphorylated sphingolipid long-chain bases reveals potential roles in heat stress and growth control in Saccharomyces. J Bacteriol 181(4):1134-40 | |DPL1 | ||||
| Reviews | Daum G, et al. (1998) Biochemistry, cell biology and molecular biology of lipids of Saccharomyces cerevisiae. Yeast 14(16):1471-510 | |ACC1 |ACP1 |AUR1 |CDS1 |CEM1 |CHO1 |CHO2 |CKI1 |CPT1 |CRD1 |CSG2 |DPL1 |DPP1 |EPT1 |MORE | ||||
| Reviews | Dickson RC (1998) Sphingolipid functions in Saccharomyces cerevisiae: comparison to mammals. Annu Rev Biochem 67:27-48 | |CSG2 |DPL1 |IPT1 |LCB1 |LCB2 |SAC1 |SUR2 | ||||
| Alias Function/Process Genetic Interactions Mutants/Phenotypes Protein Sequence Features Strains/Constructs Substrates/Ligands/Cofactors | Mandala SM, et al. (1998) Sphingoid base 1-phosphate phosphatase: a key regulator of sphingolipid metabolism and stress response. Proc Natl Acad Sci U S A 95(1):150-5 | |YSR3 | ||||
| Alias Function/Process Mutants/Phenotypes Strains/Constructs | Mao C, et al. (1997) Identification and characterization of Saccharomyces cerevisiae dihydrosphingosine-1-phosphate phosphatase. J Biol Chem 272(45):28690-4 | |YSR3 | ||||
| DNA/RNA Sequence Features Function/Process Fungal Related Genes/Proteins Genetic Interactions Mutants/Phenotypes Protein Sequence Features Strains/Constructs Techniques and Reagents | Qie L, et al. (1997) Identification of a Saccharomyces gene, LCB3, necessary for incorporation of exogenous long chain bases into sphingolipids. J Biol Chem 272(26):16110-7 | |YSR3 | ||||
| DNA/RNA Sequence Features Mapping Strains/Constructs | Katsoulou C, et al. (1996) Sequence analysis of a 40.7 kb segment from the left arm of yeast chromosome X reveals 14 known genes and 13 new open reading frames including homologues of genes clustered on the right arm of chromosome XI. Yeast 12(8):787-97 | |INO1 |MRS3 |RPA34 |RPB4 |SNA3 |SNR128 |SNR190 |TIF2 |TIM17 |URA2 |VPS35 |YAK1 |YJL135W |YJL144W |MORE | ||||
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