OST1/YJL002C Single Page Format |
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Contents
- Names and Identifiers
- GO Annotations
- Pathways
- Summary Paragraph
- Mutant Phenotypes
- Interactions
- Homologs
- Protein Info (physical properties, transcript info)
- PDB Homologs (protein structure info)
- Motifs
- Genome-wide Expression
(and other large-scale analyses)- Locus History (misc. notes)
- Sequence Retrieval and Analysis
- Map and Displays
- Localization
- Community Annotation
- Literature Guide
Sequence Coordinates
  ChrX: 434644 to 433214
CDS: 434644 - 433214Click on map for expanded view
SGD ORF map GBrowse SGD Locus Page
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| Standard Name | Systematic Name | Alias | Feature Type | SGDID | ||||
| OST1 | YJL002C | NLT1 | ORF, Verified | S000003539 | ||||
| Description | ||||||||
| Alpha subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins | ||||||||
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| No pathways available | |||||||||
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| Phenotype page for OST1/YJL002C | |||||||
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| Interaction page for OST1/YJL002C | |||||||||
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MRQVWFSWIVGLFLCFFNVSSAAQYEPPATWENVDYKRTIDVSNAYISET
IEITIKNIASEPATEYFTAFESGIFSKVSFFSAYFTNEATFLNSQLLANS
TTAPGDDGESEIRYGIIQFPNAISPQEEVSLVIKSFYNTVGIPYPEHVGM
SEEQHLLWETNRLPLSAYDTKKASFTLIGSSSFEEYHPPNDESLLGKANG
NSFEFGPWEDIPRFSSNETLAIVYSHNAPLNQVVNLRRDIWLSHWASTIQ
FEEYYELTNKAAKLSKGFSRLELMKQIQTQNMRQTHFVTVLDMLLPEGAT
DHYFTDLVGLVSTSHAERDHFFIRPRFPIFGGWNYNFTVGWTNKLSDFLH
VSSGSDEKFVASIPILNGPPDTVYDNVELSVFLPEGAEIFDIDSPVPFTN
VSIETQKSYFDLNKGHVKLTFSYRNLISQVANGQVLIKYDYPKSSFFKKP
LSIACYIFTALMGVFVLKTLNMNVTN*
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| No protein structure information available. | |||||||||
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| You can also search multiple datasets simultaneously using Expression Connection for expression studies or Function Junction for other large scale analyses. | |||||
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| Nomenclature History |
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| Standard Name | Reference |
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| OST1 | SGD (2007) Information without a citation in SGD |
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| Sequence Type | Output Format | ||||
| Genomic DNA | GCG | FASTA | NoHeader | ||||
| Genomic DNA with 1 kb up and downstream | GCG | FASTA | NoHeader | ||||
| DNA coding sequence (without introns, without flanking regions) | GCG | FASTA | NoHeader | ||||
| Protein Translation of ORF | GCG | FASTA | NoHeader | ||||
| 6-Frame Translation(with Restriction Map) | GCG | ||||
| Restriction Fragment Sizes | GCG | ||||
| Sequence from other databases | |
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| Sequence ID | Source |
| YJL002C | SGD Systematic Sequence |
| 853455 | NCBI: Gene ID |
| NP_012532.1 | NCBI: RefSeq protein version ID |
| NP_012532.1 | NCBI: RefSeq protein version ID |
| 6322458 | NCBI: NCBI protein GI |
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| Physical, Genetic Maps: | Chromosomal Feature Map | GBrowse | Combined Physical and Genetic Map | Genetic Distance vs. Physical Distance Ratios | ||||
| Similarity Viewers: | Synteny Viewer | Genomic Stripe View | SAGE Results Map |   | ||||
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| No community annotation available. | |||||||||
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| Topics | Reference | Other Genes Addressed | 49 curated references; 0 references not yet curated | |||
| Protein Physical Properties Protein-protein Interactions Techniques and Reagents | Harada Y, et al. (2009) Oligosaccharyltransferase directly binds to ribosome at a location near the translocon-binding site. Proc Natl Acad Sci U S A 106(17):6945-9 | |NIP7 |NMD3 |OST2 |OST3 |OST4 |OST5 |OST6 |RDN25-1 |RDN25-2 |RDN5-1 |RDN5-2 |RDN5-3 |RDN5-4 |RDN5-5 |MORE | ||||
| Cross-species Expression Mutants/Phenotypes Strains/Constructs | Hese K, et al. (2009) The yeast oligosaccharyltransferase complex can be replaced by STT3 from Leishmania major. Glycobiology 19(2):160-171 | |OST2 |STT3 |SWP1 |WBP1 | ||||
| Computational analysis Large-scale protein interaction | Wu M, et al. (2009) A core-attachment based method to detect protein complexes in PPI networks. BMC Bioinformatics 10:169 | |DAD1 |DAM1 |GPI2 |HAP2 |HAP3 |HAP5 |MTH1 |OST2 |OST3 |OST4 |OST5 |OST6 |PEP3 |PEP5 |MORE | ||||
| Mutants/Phenotypes Strains/Constructs | Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 | |AAR2 |ABD1 |ABF1 |ACC1 |ACP1 |ADE13 |AFG2 |ALA1 |ALG1 |ALG13 |ALG14 |ALG2 |ALG7 |ALR1 |MORE | ||||
| Fungal Related Genes/Proteins | Deshpande N, et al. (2008) Protein glycosylation pathways in filamentous fungi. Glycobiology 18(8):626-37 | |ALG1 |ALG11 |ALG12 |ALG13 |ALG14 |ALG2 |ALG3 |ALG6 |ALG7 |ALG8 |ALG9 |ANP1 |CWH41 |DIE2 |MORE | ||||
| Reviews | Jigami Y (2008) Yeast glycobiology and its application. Biosci Biotechnol Biochem 72(3):637-48 | |ALG1 |ALG11 |ALG12 |ALG13 |ALG14 |ALG2 |ALG3 |ALG5 |ALG6 |ALG7 |ALG8 |ALG9 |ANP1 |CWH41 |MORE | ||||
| Protein/Nucleic Acid Structure Strains/Constructs Techniques and Reagents | Li H, et al. (2008) Structure of the oligosaccharyl transferase complex at 12 a resolution. Structure 16(3):432-40 | |STT3 |SWP1 |WBP1 | ||||
| Cross-species Expression Mutants/Phenotypes Strains/Constructs | Nasab FP, et al. (2008) All in One: Leishmania major STT3 Proteins Substitute for the Whole Oligosaccharyltransferase Complex in Saccharomyces cerevisiae. Mol Biol Cell 19(9):3758-3768 | |OST2 |STT3 |SWP1 |WBP1 | ||||
| Genetic Interactions Large-scale genetic interaction | Qi Y, et al. (2008) Finding friends and enemies in an enemies-only network: A graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions. Genome Res 18(12):1991-2004 | |AAH1 |ADA2 |AGE1 |AGE2 |AIM29 |ALG3 |ALG5 |ALG6 |ALG8 |ALG9 |ANP1 |ARL3 |ARP3 |ARP4 |MORE | ||||
| Function/Process Non-Fungal Related Genes/Proteins Protein Physical Properties Substrates/Ligands/Cofactors | Kelleher DJ, et al. (2007) Dolichol-linked oligosaccharide selection by the oligosaccharyltransferase in protist and fungal organisms. J Cell Biol 177(1):29-37 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Protein Physical Properties Substrates/Ligands/Cofactors Techniques and Reagents | Kohda D, et al. (2007) New oligosaccharyltransferase assay method. Glycobiology 17(11):1175-82 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Reviews | Lennarz WJ (2007) Studies on oligosaccharyl transferase in yeast. Acta Biochim Pol 54(4):673-7 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Cellular Location Protein Physical Properties Protein-protein Interactions Protein/Nucleic Acid Structure Techniques and Reagents | Chavan M, et al. (2006) Dimeric organization of the yeast oligosaccharyl transferase complex. Proc Natl Acad Sci U S A 103(24):8947-52 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Reviews | Kelleher DJ and Gilmore R (2006) An evolving view of the eukaryotic oligosaccharyltransferase. Glycobiology 16(4):47R-62R | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Reviews | Lehle L, et al. (2006) Protein glycosylation, conserved from yeast to man: a model organism helps elucidate congenital human diseases. Angew Chem Int Ed Engl 45(41):6802-18 | |ALG1 |ALG11 |ALG12 |ALG13 |ALG14 |ALG2 |ALG3 |ALG5 |ALG6 |ALG7 |ALG8 |ALG9 |DIE2 |DPM1 |MORE | ||||
| RNA Levels and Processing Regulation of | Tanaka F, et al. (2006) Functional genomic analysis of commercial baker's yeast during initial stages of model dough-fermentation. Food Microbiol 23(8):717-28 | |ACE2 |ACO1 |ACS1 |ACS2 |ACT1 |ADH1 |ADH2 |ADH5 |ADK1 |AIM38 |ALD2 |ALG8 |ARG1 |ARG3 |MORE | ||||
| Cellular Location Strains/Constructs | Voeltz GK, et al. (2006) A class of membrane proteins shaping the tubular endoplasmic reticulum. Cell 124(3):573-86 | |ERG3 |ERP2 |RTN1 |RTN2 |SEC63 |SUR2 |WBP1 |YOP1 | ||||
| Reviews | Weerapana E and Imperiali B (2006) Asparagine-linked protein glycosylation: from eukaryotic to prokaryotic systems. Glycobiology 16(6):91R-101R | |ALG1 |ALG11 |ALG13 |ALG14 |ALG2 |ALG7 |ALG9 |OST2 |OST3 |OST4 |OST5 |OST6 |RFT1 |SEC11 |MORE | ||||
| Function/Process Protein-protein Interactions Strains/Constructs Techniques and Reagents | Chavan M, et al. (2005) Subunits of the translocon interact with components of the oligosaccharyl transferase complex. J Biol Chem 280(24):22917-24 | |OST2 |OST3 |OST4 |OST5 |OST6 |SBH1 |SEC61 |SSS1 |STT3 |SWP1 |WBP1 | ||||
| Reviews | Jones J, et al. (2005) Controlling N-linked glycan site occupancy. Biochim Biophys Acta 1726(2):121-37 | |MNL1 |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Genetic Interactions Mutants/Phenotypes Protein Processing/Modification/Regulation Strains/Constructs | Li G, et al. (2005) Studies on the N-glycosylation of the subunits of oligosaccharyl transferase in Saccharomyces cerevisiae. J Biol Chem 280(3):1864-71 | |STT3 |WBP1 | ||||
| Function/Process Genetic Interactions | Schuldiner M, et al. (2005) Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell 123(3):507-19 ![]() | |ALG12 |ALG3 |ALG5 |ALG6 |ALG8 |ALG9 |API2 |APL5 |APL6 |APM3 |APS3 |ARL1 |ARL3 |ARV1 |MORE | ||||
| Cellular Location Function/Process Protein-protein Interactions | Schwarz M, et al. (2005) Yeast oligosaccharyltransferase consists of two functionally distinct sub-complexes, specified by either the Ost3p or Ost6p subunit. FEBS Lett 579(29):6564-8 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Function/Process Protein-protein Interactions | Spirig U, et al. (2005) The 3.4-kDa Ost4 protein is required for the assembly of two distinct oligosaccharyltransferase complexes in yeast. Glycobiology 15(12):1396-406 | |OST3 |OST4 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Protein-protein Interactions Strains/Constructs | Yan A and Lennarz WJ (2005) Two oligosaccharyl transferase complexes exist in yeast and associate with two different translocons. Glycobiology 15(12):1407-15 | |ALG1 |OST2 |OST3 |OST4 |OST5 |OST6 |SBH1 |SBH2 |SWP1 |WBP1 | ||||
| Reviews | Yan A and Lennarz WJ (2005) Unraveling the mechanism of protein N-glycosylation. J Biol Chem 280(5):3121-4 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Protein Sequence Features Strains/Constructs Techniques and Reagents | Dempski RE Jr and Imperiali B (2004) Heterologous expression and biophysical characterization of soluble oligosaccharyl transferase subunits. Arch Biochem Biophys 431(1):63-70 | |SWP1 |WBP1 | ||||
| Cellular Location Function/Process Protein-protein Interactions Strains/Constructs | Yan A, et al. (2003) New findings on interactions among the yeast oligosaccharyl transferase subunits using a chemical cross-linker. J Biol Chem 278(35):33078-87 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Cellular Location Function/Process Substrates/Ligands/Cofactors | Yan Q and Lennarz WJ (2002) Studies on the function of oligosaccharyl transferase subunits. Stt3p is directly involved in the glycosylation process. J Biol Chem 277(49):47692-700 | |OST3 |STT3 | ||||
| Cellular Location Function/Process Mutants/Phenotypes Protein Sequence Features Protein-protein Interactions Strains/Constructs | Yan Q and Lennarz WJ (2002) Studies on the function of oligosaccharyl transferase subunits: a glycosylatable photoprobe binds to the luminal domain of Ost1p. Proc Natl Acad Sci U S A 99(25):15994-9 | |STT3 | ||||
| Protein-protein Interactions | Massaad MJ and Herscovics A (2001) Interaction of the endoplasmic reticulum alpha 1,2-mannosidase Mns1p with Rer1p using the split-ubiquitin system. J Cell Sci 114(Pt 24):4629-35 | |ALG5 |MNS1 |RER1 |SEC12 | ||||
| Protein-protein Interactions | Park H and Lennarz WJ (2000) Evidence for interaction of yeast protein kinase C with several subunits of oligosaccharyl transferase. Glycobiology 10(7):737-44 | |OST3 |PKC1 |STT3 |SWP1 |WBP1 | ||||
| Cellular Location Function/Process Protein-protein Interactions Techniques and Reagents | Knauer R and Lehle L (1999) The oligosaccharyltransferase complex from Saccharomyces cerevisiae. Isolation of the OST6 gene, its synthetic interaction with OST3, and analysis of the native complex. J Biol Chem 274(24):17249-56 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Reviews | Knauer R and Lehle L (1999) The oligosaccharyltransferase complex from yeast. Biochim Biophys Acta 1426(2):259-73 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
| Function/Process Substrates/Ligands/Cofactors Techniques and Reagents | Yan Q, et al. (1999) The Ost1p subunit of yeast oligosaccharyl transferase recognizes the peptide glycosylation site sequence, -Asn-X-Ser/Thr-. J Biol Chem 274(8):5021-5 | |||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Silberstein S, et al. (1998) A role for the DnaJ homologue Scj1p in protein folding in the yeast endoplasmic reticulum. J Cell Biol 143(4):921-33 | |JEM1 |KAR2 |OST3 |SCJ1 |SEC63 | ||||
| Cellular Location Function/Process Protein-protein Interactions Techniques and Reagents | Stagljar I, et al. (1998) A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo. Proc Natl Acad Sci U S A 95(9):5187-92 | |ALG5 |WBP1 | ||||
| Cellular Location Function/Process Protein-protein Interactions Techniques and Reagents | Karaoglu D, et al. (1997) The highly conserved Stt3 protein is a subunit of the yeast oligosaccharyltransferase and forms a subcomplex with Ost3p and Ost4p. J Biol Chem 272(51):32513-20 | |OST2 |OST3 |OST4 |OST5 |STT3 |SWP1 |WBP1 | ||||
| Protein Physical Properties Protein-protein Interactions Techniques and Reagents | Pathak R and Imperiali B (1997) A dual affinity tag on the 64-kDa Nlt1p subunit allows the rapid characterization of mutant yeast oligosaccharyl transferase complexes. Arch Biochem Biophys 338(1):1-6 | |||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Reiss G, et al. (1997) A specific screen for oligosaccharyltransferase mutations identifies the 9 kDa OST5 protein required for optimal activity in vivo and in vitro. EMBO J 16(6):1164-72 | |OST2 |OST3 |OST5 |STT3 |SWP1 |WBP1 | ||||
| Cellular Location Function/Process Protein-protein Interactions Techniques and Reagents | Spirig U, et al. (1997) The STT3 protein is a component of the yeast oligosaccharyltransferase complex. Mol Gen Genet 256(6):628-37 | |OST3 |OST4 |STT3 |SWP1 |WBP1 | ||||
| Reviews | Silberstein S and Gilmore R (1996) Biochemistry, molecular biology, and genetics of the oligosaccharyltransferase. FASEB J 10(8):849-58 | |OST2 |OST3 |OST4 |OST5 |STT3 |SWP1 |WBP1 | ||||
| Cellular Location Function/Process Mutants/Phenotypes Protein Physical Properties Strains/Constructs | Karaoglu D, et al. (1995) Functional characterization of Ost3p. Loss of the 34-kD subunit of the Saccharomyces cerevisiae oligosaccharyltransferase results in biased underglycosylation of acceptor substrates. J Cell Biol 130(3):567-77 | |ALG5 |OST3 |SWP1 |WBP1 | ||||
| Alias Cellular Location Function/Process Mutants/Phenotypes Non-Fungal Related Genes/Proteins Protein Physical Properties Protein Processing/Modification/Regulation Protein Sequence Features Strains/Constructs | Pathak R, et al. (1995) The essential yeast NLT1 gene encodes the 64 kDa glycoprotein subunit of the oligosaccharyl transferase. FEBS Lett 362(2):229-34 | |||||
| Cellular Location Function/Process Mutants/Phenotypes Non-Fungal Related Genes/Proteins Strains/Constructs | Silberstein S, et al. (1995) The alpha subunit of the Saccharomyces cerevisiae oligosaccharyltransferase complex is essential for vegetative growth of yeast and is homologous to mammalian ribophorin I. J Cell Biol 128(4):525-36 | |KAR2 |SWP1 |WBP1 | ||||
| Cellular Location Function/Process | Silberstein S, et al. (1995) The essential OST2 gene encodes the 16-kD subunit of the yeast oligosaccharyltransferase, a highly conserved protein expressed in diverse eukaryotic organisms. J Cell Biol 131(2):371-83 | |OST2 |OST3 |SWP1 |WBP1 | ||||
| Cellular Location Protein Physical Properties Protein Processing/Modification/Regulation Techniques and Reagents | Kelleher DJ and Gilmore R (1994) The Saccharomyces cerevisiae oligosaccharyltransferase is a protein complex composed of Wbp1p, Swp1p, and four additional polypeptides. J Biol Chem 269(17):12908-17 | |OST2 |OST3 |OST5 |SWP1 |WBP1 | ||||
| Cellular Location Non-Fungal Related Genes/Proteins Protein Physical Properties Protein-protein Interactions Techniques and Reagents | Knauer R and Lehle L (1994) The N-oligosaccharyltransferase complex from yeast. FEBS Lett 344(1):83-6 | |SWP1 |WBP1 | ||||
| Alias Substrates/Ligands/Cofactors | Trimble RB, et al. (1980) Effect of glucosylation of lipid intermediates on oligosaccharide transfer in solubilized microsomes from Saccharomyces cerevisiae. J Biol Chem 255(24):11892-5 | |OST2 |OST3 |OST4 |OST5 |OST6 |STT3 |SWP1 |WBP1 | ||||
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