MTR2/YKL186C Single Page Format |
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Contents
- Names and Identifiers
- GO Annotations
- Pathways
- Summary Paragraph
- Mutant Phenotypes
- Interactions
- Homologs
- Protein Info (physical properties, transcript info)
- PDB Homologs (protein structure info)
- Motifs
- Genome-wide Expression
(and other large-scale analyses)- Locus History (misc. notes)
- Sequence Retrieval and Analysis
- Map and Displays
- Localization
- Community Annotation
- Literature Guide
Sequence Coordinates
  ChrXI: 93303 to 92749
CDS: 93303 - 92749Click on map for expanded view
SGD ORF map GBrowse SGD Locus Page
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| Standard Name | Systematic Name | Alias | Feature Type | SGDID | ||||
| MTR2 | YKL186C |   | ORF, Verified | S000001669 | ||||
| Description | ||||||||
| mRNA transport regulator, essential nuclear protein; Mex67p and Mtr2p form a mRNA export complex which binds to RNA | ||||||||
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| No pathways available | |||||||||
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| No summary paragraph available | |||||||||
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| Phenotype page for MTR2/YKL186C | |||||||
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| Interaction page for MTR2/YKL186C | |||||||||
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MNTNSNTMVMNDANQAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNC
RIIFNATPFAQATVFLQMWQNQVVQTQHALTGVDYHAIPGSGTLICNVNC
KVRFDESGRDKMGQDATVPIQPNNTGNRNRPNDMNKPRPLWGPYFGISLQ
LIIDDRIFRNDFNGVISGFNYNMVYKPEDSLLKI*
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| You can also search multiple datasets simultaneously using Expression Connection for expression studies or Function Junction for other large scale analyses. | |||||
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| Nomenclature History |
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| Sequence Annotation Notes |
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| Sequence Type | Output Format | ||||
| Genomic DNA | GCG | FASTA | NoHeader | ||||
| Genomic DNA with 1 kb up and downstream | GCG | FASTA | NoHeader | ||||
| DNA coding sequence (without introns, without flanking regions) | GCG | FASTA | NoHeader | ||||
| Protein Translation of ORF | GCG | FASTA | NoHeader | ||||
| 6-Frame Translation(with Restriction Map) | GCG | ||||
| Restriction Fragment Sizes | GCG | ||||
| Sequence from other databases | |
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| Sequence ID | Source |
| YKL186C | SGD Systematic Sequence |
| 853649 | NCBI: Gene ID |
| NP_012735.1 | NCBI: RefSeq protein version ID |
| NP_012735.1 | NCBI: RefSeq protein version ID |
| 6322662 | NCBI: NCBI protein GI |
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| Physical, Genetic Maps: | Chromosomal Feature Map | GBrowse | Combined Physical and Genetic Map | Genetic Distance vs. Physical Distance Ratios | ||||
| Similarity Viewers: | Synteny Viewer | Genomic Stripe View | SAGE Results Map |   | ||||
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| No community annotation available. | |||||||||
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| Topics | Reference | Other Genes Addressed | 47 curated references; 0 references not yet curated | |||
| Reviews | Fasken MB and Corbett AH (2009) Mechanisms of nuclear mRNA quality control. RNA Biol 6(3):237-41 | |DIS3 |MEX67 |MLP1 |NAB2 |PAP2 |PML39 |RRP6 |SUB2 |YRA1 | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Faza MB, et al. (2009) Sem1 is a functional component of the nuclear pore complex-associated messenger RNA export machinery. J Cell Biol 184(6):833-46 | |CSN12 |MEX67 |SAC3 |SEM1 |SUB2 |SUS1 |THP1 |YPR045C |YRA1 | ||||
| RNA Levels and Processing Regulation of | Kawashima T, et al. (2009) Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations. RNA 15(12):2236-47 | |ACT1 |BOS1 |CDC40 |CIN2 |LSB3 |MUD1 |NAM7 |NAM8 |PRP18 |PRP2 |PRP22 |REC107 |RPL16A |RPS11B |MORE | ||||
| Reviews | Kressler D, et al. (2009) Driving Ribosome Assembly. Biochim Biophys Acta | |AFG2 |ARB1 |ARX1 |BMS1 |CRM1 |DBP10 |DBP2 |DBP3 |DBP6 |DBP7 |DBP8 |DBP9 |DRS1 |ECM1 |MORE | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Lo KY and Johnson AW (2009) Reengineering ribosome export. Mol Biol Cell 20(5):1545-54 | |ARX1 |CRM1 |CSE1 |LOS1 |LSG1 |MEX67 |MSN5 |NMD3 |RPL11B |RPL12B |RPL25 |RPL3 |RPL32 |RPL8B | ||||
| Mutants/Phenotypes Strains/Constructs | Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 | |AAR2 |ABD1 |ABF1 |ACC1 |ACP1 |ADE13 |AFG2 |ALA1 |ALG1 |ALG13 |ALG14 |ALG2 |ALG7 |ALR1 |MORE | ||||
| Reviews | Feldbrugge M, et al. (2008) The posttranscriptional machinery of Ustilago maydis. Fungal Genet Biol 45 Suppl 1:S40-6 | |ACT1 |ASH1 |DBP5 |GLE1 |KEM1 |MEX67 |MYO4 |NAM7 |NIP1 |NMD2 |NOP58 |PRT1 |RPG1 |SHE2 |MORE | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Hung NJ, et al. (2008) Arx1 Is a Nuclear Export Receptor for the 60S Ribosomal Subunit in Yeast. Mol Biol Cell 19(2):735-44 | |ARX1 |CRM1 |GLE2 |MEX67 |NIC96 |NMD3 |NSP1 |NUP100 |NUP116 |NUP120 |NUP133 |NUP42 |NUP57 |NUP82 |MORE | ||||
| Reviews | Hurt JA and Silver PA (2008) mRNA nuclear export and human disease. Dis Model Mech 1(2-3):103-8 | |DBP5 |GLE1 |MEX67 |NUP42 |SUB2 |YRA1 | ||||
| Computational analysis Evolution Fungal Related Genes/Proteins Non-Fungal Related Genes/Proteins | Ohyanagi H, et al. (2008) Eukaryotic nuclear structure explains the evolutionary rate difference of ribosome export factors. Gene 421(1-2):7-13 | |CRM1 |MAK21 |NMD3 |NOC2 |NOC3 |NOC4 |NOP14 | ||||
| Evolution Non-Fungal Related Genes/Proteins | Ohyanagi H, et al. (2008) The origin of nucleus: Rebuild from the prokaryotic ancestors of ribosome export factors. Gene 423(2):149-152 | |CRM1 |MAK21 |NMD3 |NOC2 |NOC3 |NOC4 |NOP14 | ||||
| DNA/RNA Sequence Features Mutants/Phenotypes Strains/Constructs | Parenteau J, et al. (2008) Deletion of Many Yeast Introns Reveals a Minority of Genes that Require Splicing for Function. Mol Biol Cell 19(5):1932-41 | |ACT1 |ARP2 |ARP9 |BUD25 |CIN2 |COF1 |DYN2 |GIM5 |GLC7 |HNT1 |HOP2 |LSB3 |MOB1 |MOB2 |MORE | ||||
| Reviews | Rougemaille M, et al. (2008) mRNA journey to the cytoplasm: attire required. Biol Cell 100(6):327-42 | |CBC2 |CDC33 |HRB1 |MEX67 |NAB2 |NPL3 |PAB1 |SAC3 |STO1 |SUB2 |THP1 |YRA1 | ||||
| Mutants/Phenotypes Protein Sequence Features Protein-Nucleic Acid Interactions Protein-protein Interactions Strains/Constructs | Yao W, et al. (2008) A versatile interaction platform on the Mex67-Mtr2 receptor creates an overlap between mRNA and ribosome export. EMBO J 27(1):6-16 | |MEX67 |NMD3 |NUP116 |NUP120 |NUP145 |NUP159 |NUP82 |NUP84 |NUP85 |SEC13 |SEH1 | ||||
| Function/Process | Gaillard H, et al. (2007) A new connection of mRNP biogenesis and export with transcription-coupled repair. Nucleic Acids Res 35(12):3893-906 | |DEF1 |FMP27 |HPR1 |MEX67 |MFT1 |RAD26 |RAD7 |RPB10 |RPB11 |RPB2 |RPB3 |RPB4 |RPB5 |RPB7 |MORE | ||||
| Reviews | Kohler A and Hurt E (2007) Exporting RNA from the nucleus to the cytoplasm. Nat Rev Mol Cell Biol 8(10):761-73 | |ARC1 |ARX1 |CDC31 |CEX1 |CRM1 |DBP5 |GLE1 |GLE2 |HTZ1 |LOS1 |MEX67 |MLP1 |MLP2 |NMD3 |MORE | ||||
| Protein-protein Interactions Techniques and Reagents | Oeffinger M, et al. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6 | |ACB1 |ACT1 |ADE3 |AIM34 |ASH1 |ASM4 |BEM2 |BRR2 |BRX1 |BUD8 |CBC2 |CBF5 |CDC3 |CDC31 |MORE | ||||
| Reviews | Stewart M (2007) Ratcheting mRNA out of the Nucleus. Mol Cell 25(3):327-30 | |DBP5 |GLE1 |MEX67 | ||||
| Reviews | Taddei A (2007) Active genes at the nuclear pore complex. Curr Opin Cell Biol 19(3):305-310 | |ASM4 |CDC31 |DBP5 |GAL1 |GFD1 |GLE1 |GLE2 |HSP104 |HTZ1 |INO1 |KAP120 |KAP122 |KAP123 |KAP95 |MORE | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Non-Fungal Related Genes/Proteins Protein Sequence Features Protein-Nucleic Acid Interactions Protein-protein Interactions Protein/Nucleic Acid Structure Strains/Constructs | Yao W, et al. (2007) Nuclear Export of Ribosomal 60S Subunits by the General mRNA Export Receptor Mex67-Mtr2. Mol Cell 26(1):51-62 | |MEX67 |NMD3 | ||||
| Evolution Fungal Related Genes/Proteins | De Hertogh B, et al. (2006) Emergence of species-specific transporters during evolution of the hemiascomycete phylum. Genetics 172(2):771-81 | |AAC1 |AAC3 |ACS2 |ADP1 |ADY2 |AGC1 |AGP1 |AGP2 |AGP3 |ALP1 |ALR1 |ALR2 |ANT1 |AQR1 |MORE | ||||
| Protein Physical Properties Protein-protein Interactions Strains/Constructs | Gwizdek C, et al. (2006) Ubiquitin-associated domain of Mex67 synchronizes recruitment of the mRNA export machinery with transcription. Proc Natl Acad Sci U S A 103(44):16376-81 | |GAL10 |HPR1 |MEX67 |MFT1 |PMA1 |RAD23 |RSP5 |THP2 | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Panse VG, et al. (2006) Formation and nuclear export of preribosomes are functionally linked to the small-ubiquitin-related modifier pathway. Traffic 7(10):1311-21 | |ARX1 |BUD20 |CIC1 |ECM1 |ENP1 |LSG1 |MEX67 |NOP14 |NOP7 |NSA1 |NUG1 |PWP2 |RIX1 |RIX7 |MORE | ||||
| Reviews | Izaurralde E (2004) Directing mRNA export. Nat Struct Mol Biol 11(3):210-2 | |MEX67 |NPL3 |SKY1 | ||||
| Protein Sequence Features Protein-protein Interactions Protein/Nucleic Acid Structure | Fribourg S and Conti E (2003) Structural similarity in the absence of sequence homology of the messenger RNA export factors Mtr2 and p15. EMBO Rep 4(7):699-703 | |MEX67 |NTF2 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Protein-protein Interactions Strains/Constructs | Lei EP, et al. (2003) Sac3 is an mRNA export factor that localizes to cytoplasmic fibrils of nuclear pore complex. Mol Biol Cell 14(3):836-47 | |MEX67 |SAC3 | ||||
| Fungal Related Genes/Proteins | Senay C, et al. (2003) The Mtr2-Mex67 NTF2-like domain complex. Structural insights into a dual role of Mtr2 for yeast nuclear export. J Biol Chem 278(48):48395-403 | |MEX67 |NTF2 | ||||
| Function/Process Protein-protein Interactions | Fischer T, et al. (2002) The mRNA export machinery requires the novel Sac3p-Thp1p complex to dock at the nucleoplasmic entrance of the nuclear pores. EMBO J 21(21):5843-52 | |MEX67 |NUP1 |SAC3 |SUB2 |THP1 |YRA1 | ||||
| Function/Process Fungal Related Genes/Proteins Mutants/Phenotypes Strains/Constructs | Jimeno S, et al. (2002) The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability. EMBO J 21(13):3526-35 | |HPR1 |MEX67 |MFT1 |SUB2 |THO2 |THP2 |YRA1 | ||||
| Function/Process Protein-protein Interactions | Nissan TA, et al. (2002) 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm. EMBO J 21(20):5539-47 | |ARX1 |LSG1 |MDN1 |NMD3 |NOP7 |NUG1 |RIX1 |SDA1 | ||||
| Function/Process Substrates/Ligands/Cofactors | Jensen TH, et al. (2001) A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription. Mol Cell 7(4):887-98 | |DBP5 |GLE1 |HSP104 |MEX67 |NUP159 |NUP42 |SSA4 | ||||
| Cellular Location Protein-protein Interactions | Strasser K and Hurt E (2001) Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p. Nature 413(6856):648-52 | |MEX67 |SUB2 |YRA1 | ||||
| Cellular Location Function/Process Strains/Constructs | Strawn LA, et al. (2001) The GLFG regions of Nup116p and Nup100p serve as binding sites for both Kap95p and Mex67p at the nuclear pore complex. J Biol Chem 276(9):6445-52 | |DBP5 |GLE1 |GLE2 |KAP95 |MEX67 |NUP100 |NUP116 | ||||
| Fungal Related Genes/Proteins RNA Levels and Processing | Davis CA, et al. (2000) Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast. Nucleic Acids Res 28(8):1700-6 | |AIM11 |AMA1 |AML1 |APE2 |APS3 |ARP9 |ASC1 |BET1 |BIG1 |BOS1 |CDC21 |COF1 |DCN1 |DID4 |MORE | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs Substrates/Ligands/Cofactors | Stage-Zimmermann T, et al. (2000) Factors affecting nuclear export of the 60S ribosomal subunit in vivo. Mol Biol Cell 11(11):3777-89 | |CRM1 |CSE1 |DBP5 |FAL1 |GLE1 |GLE2 |KAP104 |KAP120 |KAP123 |KAP95 |MEX67 |MSN5 |MTR10 |MTR4 |MORE | ||||
| Protein-Nucleic Acid Interactions Protein-protein Interactions Techniques and Reagents | Strasser K and Hurt E (2000) Yra1p, a conserved nuclear RNA-binding protein, interacts directly with Mex67p and is required for mRNA export. EMBO J 19(3):410-20 | |MEX67 |YRA1 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Protein-protein Interactions Strains/Constructs | Strasser K, et al. (2000) Binding of the Mex67p/Mtr2p heterodimer to FXFG, GLFG, and FG repeat nucleoporins is essential for nuclear mRNA export. J Cell Biol 150(4):695-706 | |GLE2 |MEX67 |NSP1 |NUP116 |NUP159 |NUP42 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Vainberg IE, et al. (2000) Nuclear export of heat shock and non-heat-shock mRNA occurs via similar pathways. Mol Cell Biol 20(11):3996-4005 | |GLE1 |NUP159 |NUP42 |RNA1 |SRM1 | ||||
| Non-Fungal Related Genes/Proteins | Katahira J, et al. (1999) The Mex67p-mediated nuclear mRNA export pathway is conserved from yeast to human. EMBO J 18(9):2593-609 | |MEX67 |NTF2 | ||||
| Reviews | Strasser K and Hurt E (1999) Nuclear RNA export in yeast. FEBS Lett 452(1-2):77-81 | |GLE1 |MEX67 |MTR10 |NPL3 |NSP1 |NUP120 |NUP145 |NUP159 |NUP82 |NUP85 | ||||
| Cellular Location Function/Process Mutants/Phenotypes Protein-protein Interactions Strains/Constructs | Santos-Rosa H, et al. (1998) Nuclear mRNA export requires complex formation between Mex67p and Mtr2p at the nuclear pores. Mol Cell Biol 18(11):6826-38 | |MEX67 |NUP85 | ||||
| Reviews | Fabre E and Hurt E (1997) Yeast genetics to dissect the nuclear pore complex and nucleocytoplasmic trafficking. Annu Rev Genet 31:277-313 | |ACC1 |ASM4 |CBC2 |GLE1 |GLE2 |GSP1 |HRP1 |KAP104 |KAP123 |KAP95 |LOS1 |MEX67 |MTR3 |MTR4 |MORE | ||||
| Reviews | Wente SR, et al. (1997) "The nucleus and nucleocytoplasmic transport in Saccharomyces cerevisiae." Pp. 471-546 in The Molecular and Cellular Biology of the Yeast Saccharomyces: Cell Cycle and Cell Biology, edited by Pringle JR, Broach JR and Jones EW. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press | |GLE1 |GLE2 |GSP1 |GSP2 |KAP95 |NIC96 |NPL3 |NSP1 |NTF2 |NUP1 |NUP100 |NUP116 |NUP120 |NUP133 |MORE | ||||
| Function/Process Fungal Related Genes/Proteins Reviews | Schneiter R, et al. (1995) mRNA transport in yeast: time to reinvestigate the functions of the nucleolus. Mol Biol Cell 6(4):357-70 | |NPL3 |NUP116 |NUP145 |NUP49 |RNA14 | ||||
| Fungal Related Genes/Proteins Mutants/Phenotypes Strains/Constructs | Kadowaki T, et al. (1994) Isolation and characterization of Saccharomyces cerevisiae mRNA transport-defective (mtr) mutants. J Cell Biol 126(3):649-59 | |ACC1 |MTR10 |MTR3 |MTR4 |NPL3 |SRM1 | ||||
| DNA/RNA Sequence Features Function/Process Fungal Related Genes/Proteins Mutants/Phenotypes Non-Fungal Related Genes/Proteins Protein Sequence Features Strains/Constructs | Kadowaki T, et al. (1994) Nuclear mRNA accumulation causes nucleolar fragmentation in yeast mtr2 mutant. Mol Biol Cell 5(11):1253-63 | |||||
| DNA/RNA Sequence Features Mapping Strains/Constructs | Wiemann S, et al. (1993) Sequencing and analysis of 51.6 kilobases on the left arm of chromosome XI from Saccharomyces cerevisiae reveals 23 open reading frames including the FAS1 gene. Yeast 9(12):1343-8 | |FAS1 | ||||
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