BUD3/YCL014W Single Page Format |
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Contents
- Names and Identifiers
- GO Annotations
- Pathways
- Summary Paragraph
- Mutant Phenotypes
- Interactions
- Homologs
- Protein Info (physical properties, transcript info)
- PDB Homologs (protein structure info)
- Motifs
- Genome-wide Expression
(and other large-scale analyses)- Locus History (misc. notes)
- Sequence Retrieval and Analysis
- Map and Displays
- Localization
- Community Annotation
- Literature Guide
Sequence Coordinates
  ChrIII: 96281 to 101191
CDS: 96281 - 101191
Genetic position: -9 cMClick on map for expanded view
SGD ORF map GBrowse SGD Locus Page
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| Standard Name | Systematic Name | Alias | Feature Type | SGDID | ||||
| BUD3 | YCL014W | YCL012W | ORF, Verified | S000000520 | ||||
| Description | ||||||||
| Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding | ||||||||
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| No pathways available | |||||||||
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| No summary paragraph available | |||||||||
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| Phenotype page for BUD3/YCL014W | |||||||
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| Interaction page for BUD3/YCL014W | |||||||||
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MEKDLSSLYSEKKDKENDETLFNIKLSKSVVETTPLNGHSLFDDDKSLSD
WTDNVFTQSVFYHGSDDLIWGKFFVCVYKSPNSNKLNAIIFDKLGTSCFE
SVDISSNSQYYPAIENLSPSDQESNVKKCIAVILLQRYPLLSPSDLSQIL
SNKSENCDYDPPYAGDLASSCQLITAVPPEDLGKRFFTSGLLQNRFVSST
LLDVIYENNESTIELNNRLVFHLGEQLEQLFNPVTEYSPEQTEYGYKAPE
DELPTESDDDLVKAICNELLQLQTNFTFNLVEFLQKFLIALRVRVLNEEI
NGLSTTKLNRLFPPTIDEVTRINCIFLDSLKTAIPYGSLEVLKACSITIP
YFYKAYTRHEAATKNFSKDIKLFIRHFSNVIPEREVYTEMKIESIIKGPQ
EKLLKLKLIIERLWKSKKWRPKNQEMAKKCYNNIIDVIDSFGKLDSPLHS
YSTRVFTPSGKILTELAKCWPVELQYKWLKRRVVGVYDVVDLNDENKRNL
LVIFSDYVVFINILEAESYYTSDGSNRPLISDILMNSLINEVPLPSKIPK
LKVERHCYIDEVLVSILDKSTLRFDRLKGKDSFSMVCKLSSAFISSSSVA
DLITKARILEKDTAFHLFKASRSHFTLYSTAHELCAYDSEKIKSKFALFL
NIPPSKEILEVNNLHLAFFARFCSNDGRDNIVILDVLTKHDDKHIEVTSD
NIVFTIINQLAIEIPICFSSLNSSMAKDLLCVNENLIKNLEHQLEEVKHP
STDEHRAVNSKLSGASDFDATHEKKRSYGTITTFRSYTSDLKDSPSGDNS
NVTKETKEILPVKPTKKSSKKPREIQKKTKTNASKAEHIEKKKPNKGKGF
FGVLKNVFGSKSKSKPSPVQRVPKKISQRHPKSPVKKPMTSEKKSSPKRA
VVSSPKIKKKSTSFSTKESQTAKSSLRAVEFKSDDLIGKPPDVGNGAHPQ
ENTRISSVVRDTKYVSYNPSQPVTENTSNEKNVEPKADQSTKQDNISNFA
DVEVSASSYPEKLDAETDDQIIGKATNSSSVHGNKELPDLAEVTTANRVS
TTSAGDQRIDTQSEFLRAADVENLSDDDEHRQNESRVFNDDLFGDFIPKH
YRNKQENINSSSNLFPEGKVPQEKGVSNENTNISLKTNEDASTLTQKLSP
QASKVLTENSNELKDTNNEGKDAKDIKLGDDYSDKETAKEITKPKNFVEG
ITERKEIFPTIPRLAPPASKINFQRSPSYIELFQGMRVVLDKHDAHYNWK
RLASQVSLSEGLKVNTEEDAAIINKSQDDAKAERMTQISEVIEYEMQQPI
PTYLPKAHLDDSGIEKSDDKFFEIEEELKEELKGSKTGNEDVGNNNPSNS
IPKIEKPPAFKVIRTSPVRIIGRTFEDTRKYENGSPSDISFTYDTHNNDE
PDKRLMELKFPSQDEIPDDRFYTPAEEPTAEFPVEELPNTPRSINVTTSN
NKSTDDKLSSGNIDQKPTELLDDLEFSSFNIAFGNTSMSTDNMKISSDLS
SNKTVLGNAQKVQESPSGPLIYVLPQSSTKHEKEGFLRKKQKDEPIWVSP
SKIDFADLSRRTKALTPERNTVPLKNNDSRKYKYTGEGSIGNMTNMLLTK
DASYAYLKDFVALSDDEDEDGKQNCAVGGPEKLKFY*
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| No protein structure information available. | |||||||||
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| You can also search multiple datasets simultaneously using Expression Connection for expression studies or Function Junction for other large scale analyses. | |||||
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| Nomenclature History |
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| Standard Name | Reference |
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| BUD3 | Chant J and Herskowitz I (1991) Genetic control of bud site selection in yeast by a set of gene products that constitute a morphogenetic pathway. Cell 65(7):1203-12 |
| Sequence Annotation Notes |
| Date | Note |
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| 1998-02-26 | Four separate single nucleotide sequence changes were made in the systematic sequence in the region encompassing ORF YCL014W. A single A was deleted at chromosomal coordinate 98839, as was the G at 100475, and a single G was inserted after the A at 100471, and also after the G at 100535. Note that while the coordinates may appear to be different, these changes are the exact reciprocals of those made on 1997-07-27, returning the systematic sequence to its original state in this region.
Old: 98810 GTGACAGAAAATACCAGTAACGAAAAAAAATGTCGAACCAAAAGCGGATCAATCCACAAA 98869
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New: 98814 GTGACAGAAAATACCAGTAACGAAAAAAA-TGTCGAACCAAAAGCGGATCAATCCACAAA 98872
Old: 100430 TCAAGAGTCTCCTAGTGGACCATTAATCTATGTTTTGCCTCA-AGTGAGCACAAAGCATG 100488
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New: 100433 TCAAGAGTCTCCTAGTGGACCATTAATCTATGTTTTGCCTCAGAGT-AGCACAAAGCATG 100491
Old: 100489 AGAAAGAGGGGTTCCTTCGAAAGAAACAAAAAGACGAGCCCATTTGG-TTTCCCCTAGCA 100547
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New: 100492 AGAAAGAGGGGTTCCTTCGAAAGAAACAAAAAGACGAGCCCATTTGGGTTTCCCCTAGCA 100551 |
| 2000-09-13 | Several sequence changes were made in the systematic sequence in the region encompassing feature YCL014W, resulting in the merge of ORF YCL012W into YCL014W. Note that coordinates listed are chromosomal coordinates.
Old: 96731 CAATTTGGTAGAATTTTTGCCAAAATTCCTGATCGCCTTGAGAGTCAGAGTACTCAATGA 96790
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New: 97113 CAATTTGGTAGAATTTTTGCAAAAATTCCTGATCGCCTTGAGAGTCAGAGTACTCAATGA 97172
Old: 97091 ACCTCAGGAAAAACTACTGAAGCTAAACTTAATTATAGAGAGATTGTGGAAGTCGAAAAA 97150
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New: 97473 ACCTCAGGAAAAACTACTGAAGCTAAAGTTAATTATAGAGAGATTGTGGAAGTCGAAAAA 97532
Old: 99851 TGACAAATTCTTCGAAATTGAAGAAGAACTTAAGGAAGAATTGAAGGGCAGCAAAAC-GG 99909
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New: 100233 TGACAAATTCTTCGAAATTGAAGAAGAACTTAAGGAAGAATTGAAGGGCAGCAAAACCGG 100292
Old: 99970 AGCATTCAAAGTTATTAGAACATCGCCTGTGAGAATTATCGGAAGGCACTTTTGAAGACA 100029
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New: 100353 AGCATTCAAAGTTATTAGAACATCGCCTGTGAGAATTATCGGAAGG-ACTTTTGAAGACA 100411 |
| 1997-07-27 | Two single nucleotide deletions and two single nucleotide insertions were made within the ORF YCL014W to correct the systematic reference sequence: The G at chromosomal coordinate 100475 was removed, as was the G at 100539, a single A was inserted after chromosomal coordinate 98842, and a single G was inserted after chromosomal coordinate 100478.
New: 98814 GTGACAGAAAATACCAGTAACGAAAAAAAATGTCGAACCAAAAGCGGATCAATCCACAAA 98873
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Old: 98814 GTGACAGAAAATACCAGTAACGAAAAAAA-TGTCGAACCAAAAGCGGATCAATCCACAAA 98872
New: 100434 TCAAGAGTCTCCTAGTGGACCATTAATCTATGTTTTGCCTCA-AGTGAGCACAAAGCATG 100492
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Old: 100433 TCAAGAGTCTCCTAGTGGACCATTAATCTATGTTTTGCCTCAGAGT-AGCACAAAGCATG 100491
New: 100493 AGAAAGAGGGGTTCCTTCGAAAGAAACAAAAAGACGAGCCCATTTGG-TTTCCCCTAGCA 100551
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Old: 100492 AGAAAGAGGGGTTCCTTCGAAAGAAACAAAAAGACGAGCCCATTTGGGTTTCCCCTAGCA 100551 |
| Mapping Notes |
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| Sequence Type | Output Format | ||||
| Genomic DNA | GCG | FASTA | NoHeader | ||||
| Genomic DNA with 1 kb up and downstream | GCG | FASTA | NoHeader | ||||
| DNA coding sequence (without introns, without flanking regions) | GCG | FASTA | NoHeader | ||||
| Protein Translation of ORF | GCG | FASTA | NoHeader | ||||
| 6-Frame Translation(with Restriction Map) | GCG | ||||
| Restriction Fragment Sizes | GCG | ||||
| Sequence from other databases | |
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| Sequence ID | Source |
| YCL014W | SGD Systematic Sequence |
| 850345 | NCBI: Gene ID |
| NP_009914.2 | NCBI: RefSeq protein version ID |
| NP_009914.2 | NCBI: RefSeq protein version ID |
| 10383775 | NCBI: NCBI protein GI |
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| Physical, Genetic Maps: | Chromosomal Feature Map | GBrowse | Combined Physical and Genetic Map | Genetic Distance vs. Physical Distance Ratios | ||||
| Similarity Viewers: | Synteny Viewer | Genomic Stripe View | SAGE Results Map |   | ||||
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| No community annotation available. | |||||||||
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| Topics | Reference | Other Genes Addressed | 38 curated references; 0 references not yet curated | |||
| Fungal Related Genes/Proteins | Kaufmann A and Philippsen P (2009) Of bars and rings: Hof1-dependent cytokinesis in multiseptated hyphae of Ashbya gossypii. Mol Cell Biol 29(3):771-83 | |HOF1 |IQG1 |MYO1 | ||||
| Reviews | Slaughter BD, et al. (2009) Symmetry breaking in the life cycle of the budding yeast. Cold Spring Harbor Perspect Biol 1(3):a003384 | |AXL1 |AXL2 |BEM1 |BNI1 |BNR1 |BUD2 |BUD4 |BUD5 |BUD8 |BUD9 |CDC24 |CDC42 |FAR1 |RAX1 |MORE | ||||
| Cellular Location | Zou J, et al. (2009) Regulation of cell polarity through phosphorylation of Bni4 by Pho85 G1 cyclin-dependent kinases in Saccharomyces cerevisiae. Mol Biol Cell 20(14):3239-50 | |AIM44 |APL3 |AXL1 |BCK1 |BEM1 |BEM2 |BNI1 |BNI4 |BNR1 |BOI1 |BOP3 |BUD22 |BUD4 |CDC10 |MORE | ||||
| Protein Sequence Features | Chang EJ, et al. (2007) Prediction of cyclin-dependent kinase phosphorylation substrates. PLoS One 2(7):e656 | |ACC1 |ACE2 |ACM1 |ADY3 |AFI1 |ALY2 |ASE1 |ASH1 |BCK1 |BEM3 |BNI1 |BNI4 |BOI1 |BUD4 |MORE | ||||
| Cell Cycle Phase Involved Protein-protein Interactions | Gao XD, et al. (2007) Sequential and distinct roles of the cadherin domain-containing protein Axl2p in cell polarization in yeast cell cycle. Mol Biol Cell 18(7):2542-60 | |AXL2 |BEM1 |BUD4 |CDC24 |CDC42 |CLA4 |GIC2 |GIN4 |RSR1 |SWE1 | ||||
| Function/Process Genetic Interactions Strains/Constructs | Hood-Degrenier JK, et al. (2007) Cytoplasmic Clb2 is required for timely inactivation of the mitotic inhibitor Swe1 and normal bud morphogenesis in Saccharomyces cerevisiae. Curr Genet 51(1):1-18 | |CDC28 |CLB1 |CLB2 |CLB3 |CLB4 |SWE1 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Loewen CJ, et al. (2007) Inheritance of cortical ER in yeast is required for normal septin organization. J Cell Biol 179(3):467-83 | |AXL2 |BEM2 |BEM3 |BIM1 |BNI1 |BUD6 |CDC10 |CLA4 |HSL7 |ICE2 |MIH1 |MSB3 |MSB4 |MYO4 |MORE | ||||
| Reviews | Park HO and Bi E (2007) Central roles of small GTPases in the development of cell polarity in yeast and beyond. Microbiol Mol Biol Rev 71(1):48-96 | |ACT1 |AXL1 |AXL2 |BEM1 |BEM2 |BEM3 |BNI1 |BUD2 |BUD4 |BUD5 |BUD8 |BUD9 |CDC10 |CDC11 |MORE | ||||
| Genetic Interactions Strains/Constructs | Tong Z, et al. (2007) Adjacent positioning of cellular structures enabled by a Cdc42 GTPase-activating protein-mediated zone of inhibition. J Cell Biol 179(7):1375-84 | |BEM2 |CDC24 |CDC42 |RGA1 |RGA2 |RSR1 | ||||
| Cellular Location | Caesar R, et al. (2006) Physiological importance and identification of novel targets for the N-terminal acetyltransferase NatB. Eukaryot Cell 5(2):368-78 | |ACT1 |ARP1 |CAC2 |CSM1 |DST1 |GIS1 |IOC3 |KAR3 |KAR9 |MDM20 |MLC2 |NAT3 |NNF2 |PAC10 |MORE | ||||
| Protein-protein Interactions | Smolka MB, et al. (2006) An FHA domain-mediated protein interaction network of Rad53 reveals its role in polarized cell growth. J Cell Biol 175(5):743-53 | |ASF1 |BUD14 |BUD4 |CDC10 |CDC11 |CDC12 |CDC3 |CRP1 |CST6 |ECM16 |ESC1 |FYV8 |GLN3 |IFH1 |MORE | ||||
| DNA/RNA Sequence Features Nucleic Acid Interaction Regulation of Transcription | Ansari A and Hampsey M (2005) A role for the CPF 3'-end processing machinery in RNAP II-dependent gene looping. Genes Dev 19(24):2969-78 | |PTA1 |RPO21 |RPT6 |SEN1 |SSU72 | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Gladfelter AS, et al. (2005) Interplay between septin organization, cell cycle and cell shape in yeast. J Cell Sci 118(Pt 8):1617-28 | |BNI1 |BNI4 |BNR1 |BUD4 |BUD5 |CDC12 |CDC42 |CLN1 |CLN2 |SWE1 | ||||
| Protein Sequence Features Protein-protein Interactions | Archambault V, et al. (2004) Targeted proteomic study of the cyclin-Cdk module. Mol Cell 14(6):699-711 | |ACE2 |ACM1 |BEM3 |BIK1 |BMH2 |CBK1 |CDC25 |CDC28 |CDC4 |CDC48 |CDC53 |CDC6 |CDH1 |CKS1 |MORE | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Fujita A, et al. (2004) Rax1, a protein required for the establishment of the bipolar budding pattern in yeast. Gene 327(2):161-9 | |AXL1 |AXL2 |BUD4 |BUD5 |BUD8 |BUD9 |RAX1 | ||||
| DNA/RNA Sequence Features Regulation of | Kreiman G (2004) Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes. Nucleic Acids Res 32(9):2889-900 | |ACE2 |AIM20 |ALK1 |APC1 |BUD4 |BUD8 |CDC20 |CDC5 |CHS2 |CLB1 |CLB2 |HOF1 |HST3 |IQG1 |MORE | ||||
| Cell Cycle Phase Involved Cellular Location Function/Process Mutants/Phenotypes Protein Sequence Features Protein-protein Interactions Regulatory Role Strains/Constructs | Bailly E, et al. (2003) Differential cellular localization among mitotic cyclins from Saccharomyces cerevisiae: a new role for the axial budding protein Bud3 in targeting Clb2 to the mother-bud neck. J Cell Sci 116(Pt 20):4119-30 | |CDC28 |CLB1 |CLB2 |CLB3 |CLB4 | ||||
| Fungal Related Genes/Proteins | Wendland J (2003) Analysis of the landmark protein Bud3 of Ashbya gossypii reveals a novel role in septum construction. EMBO Rep 4(2):200-4 | |||||
| Cellular Location Function/Process RNA Levels and Processing | Cullen PJ and Sprague GF Jr (2002) The roles of bud-site-selection proteins during haploid invasive growth in yeast. Mol Biol Cell 13(9):2990-3004 | |AXL1 |AXL2 |BUD2 |BUD4 |BUD8 |SNF1 | ||||
| Cellular Location Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Lord M, et al. (2002) Subcellular localization of Axl1, the cell type-specific regulator of polarity. Curr Biol 12(15):1347-52 | |AXL1 |AXL2 |BUD4 |BUD5 | ||||
| Function/Process Fungal Related Genes/Proteins Protein Processing/Modification/Regulation | Schmidt M, et al. (2002) In budding yeast, contraction of the actomyosin ring and formation of the primary septum at cytokinesis depend on each other. J Cell Sci 115(Pt 2):293-302 | |BUD4 |CHS2 |CHS3 |MYO1 |SPA2 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Kang PJ, et al. (2001) A GDP/GTP exchange factor involved in linking a spatial landmark to cell polarity. Science 292(5520):1376-8 | |AXL2 |BUD5 |BUD8 |BUD9 |RSR1 | ||||
| Genetic Interactions Mutants/Phenotypes | Freedman T, et al. (2000) Mutational and hyperexpression-induced disruption of bipolar budding in yeast. Microbiology 146 ( Pt 11)():2833-43 | |ACT1 |ATC1 |AXL2 |MYO2 |PDE2 |PFY1 |RSR1 |SMY1 | ||||
| Cell Cycle Phase Involved Cellular Location Mutants/Phenotypes Protein Processing/Modification/Regulation Regulation of Strains/Constructs Transcription | Lord M, et al. (2000) Cell cycle programs of gene expression control morphogenetic protein localization. J Cell Biol 151(7):1501-12 | |AXL2 | ||||
| Function/Process Mutants/Phenotypes Regulation of Strains/Constructs | Palecek SP, et al. (2000) Genetic analysis reveals that FLO11 upregulation and cell polarization independently regulate invasive growth in Saccharomyces cerevisiae. Genetics 156(3):1005-23 | |ADH1 |ARO7 |AXL1 |AXL2 |BEM2 |BPL1 |BUD4 |CDC53 |CSE2 |DIA1 |DIA2 |DIA3 |DIA4 |ELM1 |MORE | ||||
| Reviews | Pruyne D and Bretscher A (2000) Polarization of cell growth in yeast. J Cell Sci 113 ( Pt 4):571-85 | |ABP1 |ACT1 |AIP1 |ARC15 |ARC18 |ARC19 |ARC35 |ARC40 |ARP2 |ARP3 |AXL2 |BEM1 |BNI1 |BNI4 |MORE | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Thompson DA and Stahl FW (1999) Genetic control of recombination partner preference in yeast meiosis. Isolation and characterization of mutants elevated for meiotic unequal sister-chromatid recombination. Genetics 153(2):621-41 | |DMC1 |ELA1 |INP52 |MEC1 |MEC3 |MEK1 |MSC1 |MSC2 |MSC3 |MSC6 |MSC7 |PET122 |RAD17 |RAD24 |MORE | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Elia L and Marsh L (1998) A role for a protease in morphogenic responses during yeast cell fusion. J Cell Biol 142(6):1473-85 | |AXL1 |BEM1 |CDC24 |CDC42 |FUS2 |RSR1 | ||||
| DNA/RNA Sequence Features Techniques and Reagents | Neuwald AF, et al. (1997) Extracting protein alignment models from the sequence database. Nucleic Acids Res 25(9):1665-77 | |FUS2 | ||||
| Function/Process Regulatory Role | Halme A, et al. (1996) Bud10p directs axial cell polarization in budding yeast and resembles a transmembrane receptor. Curr Biol 6(5):570-9 | |AXL2 |BUD4 | ||||
| Genetic Interactions | Roemer T, et al. (1996) Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein. Genes Dev 10(7):777-93 | |AXL2 |CDC10 |SPA2 | ||||
| Fungal Related Genes/Proteins Mutants/Phenotypes | Sanders SL and Herskowitz I (1996) The BUD4 protein of yeast, required for axial budding, is localized to the mother/BUD neck in a cell cycle-dependent manner. J Cell Biol 134(2):413-27 | |BUD4 |CDC12 | ||||
| Cell Cycle Phase Involved Cellular Location DNA/RNA Sequence Features Function/Process Mutants/Phenotypes Protein Sequence Features Strains/Constructs | Chant J, et al. (1995) Role of Bud3p in producing the axial budding pattern of yeast. J Cell Biol 129(3):767-78 | |CDC10 |CDC11 |CDC12 |CDC3 | ||||
| Cellular Location | Sanders SL and Field CM (1995) Cell division. Bud-site selection is only skin deep. Curr Biol 5(11):1213-5 | |||||
| Fungal Related Genes/Proteins | Park HO, et al. (1993) BUD2 encodes a GTPase-activating protein for Bud1/Rsr1 necessary for proper bud-site selection in yeast. Nature 365(6443):269-74 | |BUD2 |BUD4 |BUD5 |CDC25 |RSR1 | ||||
| Function/Process | Wright RM, et al. (1993) Reversible pseudohyphal growth in haploid Saccharomyces cerevisiae is an aerobic process. Curr Genet 23(5-6):388-91 | |BUD4 | ||||
| Mutants/Phenotypes Strains/Constructs | Chant J and Herskowitz I (1991) Genetic control of bud site selection in yeast by a set of gene products that constitute a morphogenetic pathway. Cell 65(7):1203-12 | |BUD2 |BUD4 |RSR1 | ||||
| Reviews | Chant J and Pringle JR (1991) Budding and cell polarity in Saccharomyces cerevisiae. Curr Opin Genet Dev 1(3):342-50 | |CDC24 |PFY1 |RSR1 | ||||
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