PMT2/YAL023C Single Page Format |
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Contents
- Names and Identifiers
- GO Annotations
- Pathways
- Summary Paragraph
- Mutant Phenotypes
- Interactions
- Homologs
- Protein Info (physical properties, transcript info)
- PDB Homologs (protein structure info)
- Motifs
- Genome-wide Expression
(and other large-scale analyses)- Locus History (misc. notes)
- Sequence Retrieval and Analysis
- Map and Displays
- Localization
- Community Annotation
- Literature Guide
Sequence Coordinates
  ChrI: 108552 to 106273
CDS: 108552 - 106273Click on map for expanded view
SGD ORF map GBrowse SGD Locus Page
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| Standard Name | Systematic Name | Alias | Feature Type | SGDID | ||||
| PMT2 | YAL023C | FUN25 | ORF, Verified | S000000021 | ||||
| Description | ||||||||
| Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; acts in a complex with Pmt1p, can instead interact with Pmt5p in some conditions; target for new antifungals | ||||||||
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| protein modifications | |||||||||
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| Phenotype page for PMT2/YAL023C | |||||||
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| Interaction page for PMT2/YAL023C | |||||||||
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MSSSSSTGYSKNNAAHIKQENTLRQRESSSISVSEELSSADERDAEDFSK
EKPAAQSSLLRLESVVMPVIFTALALFTRMYKIGINNHVVWDEAHFGKFG
SYYLRHEFYHDVHPPLGKMLVGLSGYLAGYNGSWDFPSGEIYPDYLDYVK
MRLFNASFSALCVPLAYFTAKAIGFSLPTVWLMTVLVLFENSYSTLGRFI
LLDSMLLFFTVASFFSFVMFHNQRSKPFSRKWWKWLLITGISLGCTISVK
MVGLFIITMVGIYTVIDLWTFLADKSMSWKTYINHWLARIFGLIIVPFCI
FLLCFKIHFDLLSHSGTGDANMPSLFQARLVGSDVGQGPRDIALGSSVVS
IKNQALGGSLLHSHIQTYPDGSNQQQVTCYGYKDANNEWFFNRERGLPSW
SENETDIEYLKPGTSYRLVHKSTGRNLHTHPVAAPVSKTQWEVSGYGDNV
VGDNKDNWVIEIMDQRGDEDPEKLHTLTTSFRIKNLEMGCYLAQTGNSLP
EWGFRQQEVVCMKNPFKRDKRTWWNIETHENERLPPRPEDFQYPKTNFLK
DFIHLNLAMMATNNALVPDPDKFDYLASSAWQWPTLNVGLRLCGWGDDNP
KYFLLGTPASTWASSVAVLAFMATVVILLIRWQRQYVDLRNPSNWNVFLM
GGFYPLLAWGLHYMPFVIMSRVTYVHHYLPALYFALIILAYCFDAGLQKW
SRSKCGRIMRFVLYAGFMALVIGCFWYFSPISFGMEGPSSNFRYLNWFST
WDIADKQEA*
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| You can also search multiple datasets simultaneously using Expression Connection for expression studies or Function Junction for other large scale analyses. | |||||
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| Nomenclature History |
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| Standard Name | Reference |
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| PMT2 | SGD (2007) Information without a citation in SGD |
| Sequence Annotation Notes |
| Date | Note |
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| 2002-12-17 | Due to the insertion of CC after the C at 108137, and the insertion of a G after the G at 108143 in the systematic sequence of Chromosome I, the coordinates of PMT2/YAL023C have been changed. Thanks to Verena Girrbach (verena.girrbach@biologie.uni-regensburg.de) for reporting this sequence error in the systematic sequence of PMT2/FUN25/YAL023C to SGD. Old: 108121 AGTCTGGGTAAATTTCC--AGAAGG-AAGTCCCAAGAACCGTTGTAGCCTGCCAAATAAC 108177
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New: 108121 AGTCTGGGTAAATTTCCCCAGAAGGGAAGTCCCAAGAACCGTTGTAGCCTGCCAAATAAC 108180 |
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| Sequence Type | Output Format | ||||
| Genomic DNA | GCG | FASTA | NoHeader | ||||
| Genomic DNA with 1 kb up and downstream | GCG | FASTA | NoHeader | ||||
| DNA coding sequence (without introns, without flanking regions) | GCG | FASTA | NoHeader | ||||
| Protein Translation of ORF | GCG | FASTA | NoHeader | ||||
| 6-Frame Translation(with Restriction Map) | GCG | ||||
| Restriction Fragment Sizes | GCG | ||||
| Sequence from other databases | |
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| Sequence ID | Source |
| YAL023C | SGD Systematic Sequence |
| 851210 | NCBI: Gene ID |
| NP_009379.2 | NCBI: RefSeq protein version ID |
| NP_009379.2 | NCBI: RefSeq protein version ID |
| 27469358 | NCBI: NCBI protein GI |
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| Physical, Genetic Maps: | Chromosomal Feature Map | GBrowse | Combined Physical and Genetic Map | Genetic Distance vs. Physical Distance Ratios | ||||
| Similarity Viewers: | Synteny Viewer | Genomic Stripe View | SAGE Results Map |   | ||||
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| No community annotation available. | |||||||||
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| Topics | Reference | Other Genes Addressed | 46 curated references; 0 references not yet curated | |||
| Reviews | Chiba Y and Akeboshi H (2009) Glycan engineering and production of 'humanized' glycoprotein in yeast cells. Biol Pharm Bull 32(5):786-95 | |KTR6 |MNN1 |MNN4 |OCH1 |PMT1 |PMT3 |PMT4 |PMT5 |PMT6 | ||||
| Fungal Related Genes/Proteins | Fernandez-Alvarez A, et al. (2009) The O-Mannosyltransferase PMT4 Is Essential for Normal Appressorium Formation and Penetration in Ustilago maydis. Plant Cell 21(10):3397-412 | |KRE2 |MNN1 |MNT4 |PMT1 |PMT4 | ||||
| Regulation of Transcription | Kirmizis A, et al. (2009) Distinct transcriptional outputs associated with mono- and dimethylated histone H3 arginine 2. Nat Struct Mol Biol 16(4):449-51 | |BRE2 |ECM19 |HHF2 |HHT1 |HHT2 |HOP1 |SDC1 |SET1 |SHG1 |SPP1 |SPR3 |SWD1 |SWD2 |SWD3 | ||||
| Mutants/Phenotypes | Murakami-Sekimata A, et al. (2009) O-Mannosylation is required for the solubilization of heterologously expressed human beta-amyloid precursor protein in Saccharomyces cerevisiae. Genes Cells 14(2):205-15 | |PMT1 |PMT4 |SEC12 |SEC18 | ||||
| Fungal Related Genes/Proteins | Willger SD, et al. (2009) Characterization of the PMT gene family in Cryptococcus neoformans. PLoS One 4(7):e6321 | |PMT1 |PMT4 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Hirayama H, et al. (2008) O-Mannosylation is Required for Degradation of the Endoplasmic Reticulum-associated Degradation Substrate Gas1*p via the Ubiquitin/Proteasome Pathway in Saccharomyces cerevisiae. J Biochem 143(4):555-67 | |GAS1 |KRE2 |KTR1 |KTR3 |PEP4 |PMT1 |PMT4 |PMT6 |VPS30 |VPS38 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Izquierdo A, et al. (2008) Saccharomyces cerevisiae Grx6 and Grx7 are monothiol glutaredoxins associated with the early secretory pathway. Eukaryot Cell 7(8):1415-26 | |CRZ1 |GRX6 |GRX7 |MSN2 |MSN4 |PMT1 | ||||
| Reviews | Jigami Y (2008) Yeast glycobiology and its application. Biosci Biotechnol Biochem 72(3):637-48 | |ALG1 |ALG11 |ALG12 |ALG13 |ALG14 |ALG2 |ALG3 |ALG5 |ALG6 |ALG7 |ALG8 |ALG9 |ANP1 |CWH41 |MORE | ||||
| Reviews | Lengeler KB, et al. (2008) Protein-O-mannosyltransferases in virulence and development. Cell Mol Life Sci 65(4):528-44 | |AGA1 |AGA2 |AXL2 |BAR1 |CIS3 |CTS1 |FUS1 |GAS1 |HSP150 |KEX2 |KRE9 |MID2 |PIR1 |PIR3 |MORE | ||||
| Regulation of Transcription | van den Brink J, et al. (2008) New insights into the Saccharomyces cerevisiae fermentation switch: dynamic transcriptional response to anaerobicity and glucose-excess. BMC Genomics 9:100 | |ACE2 |ALG7 |ARE1 |AUS1 |BAS1 |DAL5 |DAN1 |DAN4 |DNF2 |FAA4 |FET4 |FHL1 |GCN4 |GLN3 |MORE | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Gorka-Niec W, et al. (2007) Protein glycosylation in pmt mutants of Saccharomyces cerevisiae. Influence of heterologously expressed cellobiohydrolase II of Trichoderma reesei and elevated levels of GDP-mannose and cis-prenyltransferase activity. Biochim Biophys Acta 1770(5):774-80 | |PMT1 |PSA1 |RER2 | ||||
| Reviews | Goto M (2007) Protein o-glycosylation in fungi: diverse structures and multiple functions. Biosci Biotechnol Biochem 71(6):1415-27 | |BAR1 |CTS1 |GAS1 |HSP150 |KEX2 |KRE2 |KRE9 |KTR1 |KTR3 |PMT1 |PMT3 |PMT4 |PMT5 |PMT6 |MORE | ||||
| Computational analysis Protein-protein Interactions | Larsen P, et al. (2007) A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experiments. BMC Bioinformatics 8:317 | |CDC45 |HEK2 |HHF1 |HHT1 |HSL1 |HTA1 |HTA2 |HTB1 |HTB2 |HTZ1 |KCC4 |MNN1 |PMT1 |PMT3 |MORE | ||||
| Protein-Nucleic Acid Interactions RNA Levels and Processing | Oeffinger M, et al. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6 | |ACB1 |ACT1 |ADE3 |AIM34 |ASH1 |ASM4 |BEM2 |BRR2 |BRX1 |BUD8 |CBC2 |CBF5 |CDC3 |CDC31 |MORE | ||||
| Mutants/Phenotypes Strains/Constructs | Quan X, et al. (2007) The localization of nuclear exporters of the importin-beta family is regulated by Snf1 kinase, nutrient supply and stress. Biochim Biophys Acta 1773(7):1052-61 | |BCK1 |CRM1 |CSE1 |LOS1 |MID2 |MKK1 |MKK2 |MSN5 |PKC1 |REG1 |ROM1 |SLG1 |SLT2 |SNF1 | ||||
| Fungal Related Genes/Proteins | Insenser M, et al. (2006) Proteomic analysis of detergent-resistant membranes from Candida albicans. Proteomics 6 Suppl 1:S74-81 | |ATP2 |ECM33 |EFT1 |EFT2 |ERG11 |HSC82 |HXT6 |KRE2 |KTR1 |PET2 |PMA1 |POR1 |RPL16A |RPL4B |MORE | ||||
| Reviews | Lehle L, et al. (2006) Protein glycosylation, conserved from yeast to man: a model organism helps elucidate congenital human diseases. Angew Chem Int Ed Engl 45(41):6802-18 | |ALG1 |ALG11 |ALG12 |ALG13 |ALG14 |ALG2 |ALG3 |ALG5 |ALG6 |ALG7 |ALG8 |ALG9 |DIE2 |DPM1 |MORE | ||||
| Mutants/Phenotypes Strains/Constructs | Serrano R, et al. (2006) Signaling alkaline pH stress in the yeast Saccharomyces cerevisiae through the Wsc1 cell surface sensor and the Slt2 MAPK pathway. J Biol Chem 281(52):39785-95 | |BCK1 |CRH1 |DFG5 |GSC2 |IRC14 |PMT1 |SKT5 |SLG1 |SLT2 |SWI4 |SWI6 | ||||
| Cross-species Expression Fungal Related Genes/Proteins Genetic Interactions Mutants/Phenotypes Strains/Constructs | Agaphonov MO, et al. (2005) Mutation of the protein-O-mannosyltransferase enhances secretion of the human urokinase-type plasminogen activator in Hansenula polymorpha. Yeast 22(13):1037-47 | |PMT1 | ||||
| Function/Process Genetic Interactions | Schuldiner M, et al. (2005) Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell 123(3):507-19 ![]() | |ALG12 |ALG3 |ALG5 |ALG6 |ALG8 |ALG9 |API2 |APL5 |APL6 |APM3 |APS3 |ARL1 |ARL3 |ARV1 |MORE | ||||
| Fungal Related Genes/Proteins | Tanaka N, et al. (2005) Characterization of O-mannosyltransferase family in Schizosaccharomyces pombe. Biochem Biophys Res Commun 330(3):813-20 | |PMT1 |PMT4 | ||||
| Fungal Related Genes/Proteins | Willer T, et al. (2005) Protein O-mannosylation is crucial for cell wall integrity, septation and viability in fission yeast. Mol Microbiol 57(1):156-70 | |PMT1 |PMT4 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs | Frieman MB and Cormack BP (2004) Multiple sequence signals determine the distribution of glycosylphosphatidylinositol proteins between the plasma membrane and cell wall in Saccharomyces cerevisiae. Microbiology 150(Pt 10):3105-14 | |FLO1 |FLO9 |KRE2 |KTR1 |KTR3 |MNN1 |MNN9 |PMT1 |PMT3 |PMT4 |PMT5 |PMT6 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Lommel M, et al. (2004) Aberrant processing of the WSC family and Mid2p cell surface sensors results in cell death of Saccharomyces cerevisiae O-mannosylation mutants. Mol Cell Biol 24(1):46-57 | |MID2 |PKC1 |PMT4 |SLG1 |SLT2 |WSC2 | ||||
| Genetic Interactions Strains/Constructs | Parsons AB, et al. (2004) Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways. Nat Biotechnol 22(1):62-9 | |ARV1 |BEM1 |BEM2 |BRE1 |BRE2 |BTS1 |BUD25 |CAX4 |CHO2 |CIK1 |CIN1 |CIN2 |CIN4 |CLB3 |MORE | ||||
| Genetic Interactions Strains/Constructs | Tong AH, et al. (2004) Global mapping of the yeast genetic interaction network. Science 303(5659):808-13 | |AAD4 |AAH1 |ABF2 |ACE2 |ADH6 |AEP2 |AFG1 |AGP1 |AHC1 |AHC2 |AIM21 |AIM22 |AIM26 |AIM29 |MORE | ||||
| Function/Process Mutants/Phenotypes Protein-protein Interactions Regulatory Role Substrates/Ligands/Cofactors | Ecker M, et al. (2003) O-mannosylation precedes and potentially controls the N-glycosylation of a yeast cell wall glycoprotein. EMBO Rep 4(6):628-32 | |CIS3 |PMT1 |PMT4 | ||||
| Function/Process Fungal Related Genes/Proteins Genetic Interactions Mutants/Phenotypes Protein Sequence Features Protein-protein Interactions Protein/Nucleic Acid Structure Substrates/Ligands/Cofactors | Girrbach V and Strahl S (2003) Members of the evolutionarily conserved PMT family of protein O-mannosyltransferases form distinct protein complexes among themselves. J Biol Chem 278(14):12554-62 | |PMT1 |PMT3 |PMT4 |PMT5 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs | Huang G, et al. (2003) Posttranslational modifications required for cell surface localization and function of the fungal adhesin Aga1p. Eukaryot Cell 2(5):1099-114 | |AGA1 |PMT1 | ||||
| RNA Levels and Processing Regulation of | Jones DL, et al. (2003) Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway. Physiol Genomics 16(1):107-18 | |ACS1 |ADR1 |ALK1 |ARN1 |ATH1 |BUD19 |CAT8 |CCT7 |CCW12 |CHA4 |CHS2 |CTT1 |CUP5 |CYC7 |MORE | ||||
| Fungal Related Genes/Proteins | Zakrzewska A, et al. (2003) cDNA encoding protein O-mannosyltransferase from the filamentous fungus Trichoderma reesei; functional equivalence to Saccharomyces cerevisiae PMT2. Curr Genet 43(1):11-6 | |PMT4 | ||||
| Fungal Related Genes/Proteins | Shaw BD and Momany M (2002) Aspergillus nidulans polarity mutant swoA is complemented by protein O-mannosyltransferase pmtA. Fungal Genet Biol 37(3):263-70 | |PMT3 |PMT6 | ||||
| Function/Process Mutants/Phenotypes Strains/Constructs Substrates/Ligands/Cofactors | Harty C, et al. (2001) O-mannosylation protects mutant alpha-factor precursor from endoplasmic reticulum-associated degradation. Mol Biol Cell 12(4):1093-101 | |SEC61 | ||||
| Function/Process Genetic Interactions Mutants/Phenotypes Strains/Constructs Substrates/Ligands/Cofactors | Philip B and Levin DE (2001) Wsc1 and Mid2 are cell surface sensors for cell wall integrity signaling that act through Rom2, a guanine nucleotide exchange factor for Rho1. Mol Cell Biol 21(1):271-80 | |MID2 |PKC1 |RHO1 |ROM2 |SLG1 | ||||
| Fungal Related Genes/Proteins Protein Sequence Features Protein-protein Interactions | Girrbach V, et al. (2000) Structure-function analysis of the dolichyl phosphate-mannose: protein O-mannosyltransferase ScPmt1p. J Biol Chem 275(25):19288-96 | |PMT1 |PMT3 |PMT4 |PMT5 |PMT6 | ||||
| RNA Levels and Processing | Braley R and Chaffin WL (1999) Variations in mRNA transcript levels of cell wall-associated genes of Saccharomyces cerevisiae following spheroplasting. FEMS Microbiol Lett 181(1):177-85 | |CRH1 |EGT2 |EXO1 |FLO1 |HKR1 |KRE1 |KRE11 |KRE5 |MSN1 |MUC1 |SEC53 |SED1 |SKT5 |TIR1 | ||||
| Function/Process Fungal Related Genes/Proteins | Romero PA, et al. (1999) Mnt2p and Mnt3p of Saccharomyces cerevisiae are members of the Mnn1p family of alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides. Glycobiology 9(10):1045-51 | |MNN1 |MNT2 |MNT3 |MNT4 |PMT1 |PMT3 |PMT4 |PMT5 |PMT6 | ||||
| Function/Process Fungal Related Genes/Proteins Genetic Interactions Mutants/Phenotypes Protein-protein Interactions Strains/Constructs | Timpel C, et al. (1998) Multiple functions of Pmt1p-mediated protein O-mannosylation in the fungal pathogen Candida albicans. J Biol Chem 273(33):20837-46 | |PMT1 |PMT3 |PMT4 |PMT5 |PMT6 | ||||
| Function/Process Fungal Related Genes/Proteins Mutants/Phenotypes Strains/Constructs Substrates/Ligands/Cofactors | Gentzsch M and Tanner W (1997) Protein-O-glycosylation in yeast: protein-specific mannosyltransferases. Glycobiology 7(4):481-6 | |AGA2 |BAR1 |CTS1 |GAS1 |HSP150 |KEX2 |KRE9 |PMT1 |PMT3 |PMT4 |PMT5 |PMT6 | ||||
| Genetic Interactions Mutants/Phenotypes Strains/Constructs | Finck M, et al. (1996) Defective threonine-linked glycosylation of human insulin-like growth factor in mutants of the yeast Saccharomyces cerevisiae. Glycobiology 6(3):313-20 | |PMT1 | ||||
| Cellular Location Function/Process Fungal Related Genes/Proteins Mutants/Phenotypes Strains/Constructs Substrates/Ligands/Cofactors | Gentzsch M and Tanner W (1996) The PMT gene family: protein O-glycosylation in Saccharomyces cerevisiae is vital. EMBO J 15(21):5752-9 | |GAS1 |PMT1 |PMT3 |PMT4 |PMT5 |PMT6 |PMT7 | ||||
| Fungal Related Genes/Proteins | Guerreiro P, et al. (1996) Sequencing of a 17.6 kb segment on the right arm of yeast chromosome VII reveals 12 ORFs, including CCT, ADE3 and TR-I genes, homologues of the yeast PMT and EF1G genes, of the human and bacterial electron-transferring flavoproteins (beta-chain) and of the Escherichia coli phosphoserine phosphohydrolase, and five new ORFs. Yeast 12(3):273-80 | |ADE3 |CAM1 |CIR1 |ELP2 |MVB12 |PCT1 |PMT1 |PMT6 |SER2 |TDA10 |TEF4 |TRX2 |YCH1 |YGR201C |MORE | ||||
| Function/Process Mutants/Phenotypes Protein-protein Interactions Strains/Constructs Techniques and Reagents | Gentzsch M, et al. (1995) Protein O-glycosylation in Saccharomyces cerevisiae: the protein O-mannosyltransferases Pmt1p and Pmt2p function as heterodimer. FEBS Lett 377(2):128-30 | |PMT1 | ||||
| Function/Process Fungal Related Genes/Proteins Genetic Interactions Mutants/Phenotypes Protein Sequence Features Strains/Constructs | Immervoll T, et al. (1995) PMT3 and PMT4, two new members of the protein-O-mannosyltransferase gene family of Saccharomyces cerevisiae. Yeast 11(14):1345-51 | |PMT1 |PMT3 |PMT4 | ||||
| Alias Function/Process Genetic Interactions Mapping Mutants/Phenotypes Strains/Constructs | Lussier M, et al. (1995) Protein O-glycosylation in yeast. The PMT2 gene specifies a second protein O-mannosyltransferase that functions in addition to the PMT1-encoded activity. J Biol Chem 270(6):2770-5 | |PMT1 | ||||
| Alias Mutants/Phenotypes Strains/Constructs | Barton AB and Kaback DB (1994) Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: analysis of the genes in the FUN38-MAK16-SPO7 region. J Bacteriol 176(7):1872-80 | |ATS1 |CCR4 |CYS3 |DEP1 |DRS2 |FUN26 |FUN30 |LTE1 |MAK16 |NTG1 |PSK1 |RAD16 |RAD54 |SPO7 |MORE | ||||
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