Advanced Search to be Retired Help



Over the last few months we have incorporated all of the functionality of Advanced Search, and much more, into YeastMine, an interface that offers flexible queries and fast retrieval of chromosomal features, sequences, GO annotations, interaction data and phenotype annotations. ADVANCED SEARCH WILL BE RETIRED 8/31/2011.

As an introduction to YeastMine, Short video tutorials that walk you through some of the basic actions in YeastMine are also available.

This search allows you to retrieve chromosomal features that match the selected criteria.

Keyword searches can be performed using the Search box located at the top of most SGD pages. More specific searches, such as those for phenotype, protein, or sequence information, can be accessed from the Search Options page.

Advanced Search:
Step 1: Select chromosomal feature ( REQUIRED )
  • Select one or more feature types
Step 2: Narrow results ( OPTIONAL )
  • Select search criteria to return specific types of genes. Results will match all selected criteria.

  • Select search criteria by clicking on a checkbox, filling in a dialog box, or selecting a menu option.

  • Select or unselect multiple options for Chromosomes and GO terms by pressing the Control (PC) or Command (Mac) key while clicking.
Annotation/sequence properties:
Is an ORF that is

The default search excludes Deleted and Merged features.		AND
Is a silenced gene AND
Intron(s) in ORF sequences AND
Intron(s) in 5' UTRs AND
Involves frameshift translation AND
Is on the following chromosome(s):
AND
Protein properties:
Molecular weight is between and daltonsAND
Protein length is between and amino acidsAND
pI (calculated) is between and AND
Phenotype properties:
Systematic deletion phenotype is OR (choose one)AND
Interaction properties:
Has a physical interaction: AND
Exhibits a genetic interaction:
Selecting "no" for both options will return features that have no interaction data in SGD.		AND
Gene Ontology (GO) annotation:
Is annotated to the following GO-Slim term(s):
you will retrieve features annotated directly to the GO terms you select as well as any children of those GO terms. If you select multiple GO terms, resulting features must be annotated to all terms you select (i.e. the search uses AND not OR). You can select or deselect multiple GO terms by pressing Control [PC] or Command [Mac] while clicking.
Biological Process term(s):
Molecular Function term(s):

Cellular Component term(s):

Add additional GOIDs here
(separated by space or newline):
AND
Large-scale expression:
Features whose expression:
by fold (Enter a positive integer greater than or equal to 2) in any of the Expression Connection data sets.