Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Chen W, et al. (2012) iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties. PLoS One 7(10):e47843 | Computational analysis , Omics |
| Chen X and Burgoyne RD (2012) Identification of common genetic modifiers of neurodegenerative diseases from an integrative analysis of diverse genetic screens in model organisms. BMC Genomics 13(1):71 | Omics , Other genomic analysis |
| Chen X, et al. (2012) Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes. Science 335(6073):1235-8 | Omics , Other genomic analysis |
| Chen X, et al. (2012) The Fun30 nucleosome remodeller promotes resection of DNA double-strand break ends. Nature 489(7417):576-80 | Genomic expression study , Large-scale phenotype analysis , Omics |
| Cheng E, et al. (2012) Genome rearrangements caused by depletion of essential DNA replication proteins in Saccharomyces cerevisiae. Genetics 192(1):147-60 | Comparative genomic hybridization , Large-scale phenotype analysis , Omics |
| Chesi A, et al. (2012) The Role of the Parkinson's Disease Gene PARK9 in Essential Cellular Pathways and the Manganese Homeostasis Network in Yeast. PLoS One 7(3):e34178 | Large-scale genetic interaction , Large-scale phenotype analysis , Omics |
| Cheung HC, et al. (2012) An S/T-Q cluster domain census unveils new putative targets under Tel1/Mec1 control. BMC Genomics 13(1):664 | Omics |
| Cheung-Ong K, et al. (2012) Comparative chemogenomics to examine the mechanism of action of dna-targeted platinum-acridine anticancer agents. ACS Chem Biol 7(11):1892-901 | Large-scale phenotype analysis , Omics |
| Chiam TC and Cho YR (2012) Accuracy improvement in protein complex prediction from protein interaction networks by refining cluster overlaps. Proteome Sci 10 Suppl 1():S3 | Computational analysis , Omics |
| Chiang S, et al. (2012) Analysis of the association between transcription factor binding site variants and distinct accompanying regulatory motifs in yeast. Gene 491(2):237-45 | Computational analysis , Omics |
| Chin BL, et al. (2012) Genetic variation in Saccharomyces cerevisiae: circuit diversification in a signal transduction network. Genetics 192(4):1523-32 | Large-scale phenotype analysis , Omics , Other genomic analysis |
| Chin SL, et al. (2012) Dynamics of oscillatory phenotypes in Saccharomyces cerevisiae reveal a network of genome-wide transcriptional oscillators. FEBS J 279(6):1119-30 | Genomic expression study , Omics |
| Chinchilla K, et al. (2012) Interactions of Sen1, Nrd1, and Nab3 with multiple phosphorylated forms of the Rpb1 C-terminal domain in Saccharomyces cerevisiae. Eukaryot Cell 11(4):417-29 | Genomic co-immunoprecipitation study , Omics |
| Chou IC and Voit EO (2012) Estimation of dynamic flux profiles from metabolic time series data. BMC Syst Biol 6(1):84 | Computational analysis , Omics |
| Chu D and von der Haar T (2012) The architecture of eukaryotic translation. Nucleic Acids Res 40(20):10098-106 | Computational analysis , Omics |
| Chueh TH and Lu HH (2012) Inference of biological pathway from gene expression profiles by time delay boolean networks. PLoS One 7(8):e42095 | Computational analysis , Omics |
| Chumnanpuen P, et al. (2012) Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast. Mol Genet Genomics 287(7):541-54 | Genomic expression study , Omics |
| Chursov A, et al. (2012) Sequence-structure relationships in yeast mRNAs. Nucleic Acids Res 40(3):956-62 | Computational analysis , Omics |
| Chymkowitch P, et al. (2012) Cdc28 kinase activity regulates the basal transcription machinery at a subset of genes. Proc Natl Acad Sci U S A 109(26):10450-5 | Genomic co-immunoprecipitation study , Omics |
| Clark NL, et al. (2012) Evolutionary rate covariation reveals shared functionality and coexpression of genes. Genome Res 22(4):714-20 | Computational analysis , Omics |
| Cochran G, et al. (2012) A stochastic model for the development of Bateson-Dobzhansky-Muller incompatibilities that incorporates protein interaction networks. Math Biosci 238(1):49-53 | Computational analysis , Omics |
| Combina M, et al. (2012) Genome-wide gene expression of a natural hybrid between Saccharomyces cerevisiae and S. kudriavzevii under enological conditions. Int J Food Microbiol 157(3):340-5 | Genomic expression study , Omics |
| Connelly CF and Akey JM (2012) On the prospects of whole-genome association mapping in Saccharomyces cerevisiae. Genetics 191(4):1345-53 | Computational analysis , Omics , Other genomic analysis |
| Contreras A, et al. (2012) Identification of genes related to nitrogen uptake in wine strains of Saccharomyces cerevisiae. World J Microbiol Biotechnol 28(3):1107-13 | Genomic expression study , Omics |
| Conway MK, et al. (2012) Glucose, Nitrogen, and Phosphate Repletion in Saccharomyces cerevisiae: Common Transcriptional Responses to Different Nutrient Signals. G3 (Bethesda) 2(9):1003-17 | Genomic expression study , Omics |
| Cook KE and O'Shea EK (2012) Hog1 Controls Global Reallocation of RNA Pol II upon Osmotic Shock in Saccharomyces cerevisiae. G3 (Bethesda) 2(9):1129-36 | Genomic co-immunoprecipitation study , Genomic expression study , Omics |
| Copic A, et al. (2012) ER cargo properties specify a requirement for COPII coat rigidity mediated by Sec13p. Science 335(6074):1359-62 | Large-scale genetic interaction , Omics |
| Corcoles-Saez I, et al. (2012) Low temperature highlights the functional role of the cell wall integrity pathway in the regulation of growth in Saccharomyces cerevisiae. Biochem J 446(3):477-88 | Genomic expression study , Omics |
| Cottrell D, et al. (2012) Stochastic branching-diffusion models for gene expression. Proc Natl Acad Sci U S A 109(25):9699-704 | Computational analysis , Omics |
| Cournac A, et al. (2012) Normalization of a chromosomal contact map. BMC Genomics 13(1):436 | Computational analysis , Omics |
