Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Guda C, et al. (2009) A top-down approach to infer and compare domain-domain interactions across eight model organisms. PLoS ONE 4(3):e5096 | Computational analysis |
| Guillen-Gosalbez G and Sorribas A (2009) Identifying quantitative operation principles in metabolic pathways: a systematic method for searching feasible enzyme activity patterns leading to cellular adaptive responses. BMC Bioinformatics 10():386 | Computational analysis |
| Guo X and Hartemink AJ (2009) Domain-oriented edge-based alignment of protein interaction networks. Bioinformatics 25(12):i240-6 | Computational analysis |
| Gustafsson M, et al. (2009) Genome-wide system analysis reveals stable yet flexible network dynamics in yeast. IET Syst Biol 3(4):219 | Computational analysis , Other genomic analysis |
| Halbeisen RE and Gerber AP (2009) Stress-Dependent Coordination of Transcriptome and Translatome in Yeast. PLoS Biol 7(5):e105 | Genomic expression study , Large-scale protein detection , Large-scale protein interaction |
| Halder K, et al. (2009) Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals. Mol Biosyst 5(12):1703-12 | Computational analysis , Other genomic analysis |
| Hall BM, et al. (2009) Fluctuation AnaLysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis. Bioinformatics 25(12):1564-1565 | Computational analysis |
| Halperin Y, et al. (2009) Allegro: analyzing expression and sequence in concert to discover regulatory programs. Nucleic Acids Res 37(5):1566-79 | Computational analysis |
| Hannum G, et al. (2009) Genome-wide association data reveal a global map of genetic interactions among protein complexes. PLoS Genet 5(12):e1000782 | Computational analysis |
| Hase T, et al. (2009) Structure of protein interaction networks and their implications on drug design. PLoS Comput Biol 5(10):e1000550 | Computational analysis |
| Hawkins J, et al. (2009) Assessing phylogenetic motif models for predicting transcription factor binding sites. Bioinformatics 25(12):i339-47 | Computational analysis |
| Hawkins RJ, et al. (2009) Rebuilding cytoskeleton roads: active-transport-induced polarization of cells. Phys Rev E Stat Nonlin Soft Matter Phys 80(4 Pt 1):040903 | Computational analysis |
| Hays FA, et al. (2009) Ratiocinative screen of eukaryotic integral membrane protein expression and solubilization for structure determination. J Struct Funct Genomics 10(1):9-16 | Other large-scale proteomic analysis |
| Hazelwood LA, et al. (2009) Identity of the growth-limiting nutrient strongly affects storage carbohydrate accumulation in anaerobic chemostat cultures of Saccharomyces cerevisiae. Appl Environ Microbiol 75(21):6876-85 | Genomic expression study |
| He X and Zhang J (2009) On the growth of scientific knowledge: yeast biology as a case study. PLoS Comput Biol 5(3):e1000320 | Computational analysis , Other large-scale proteomic analysis |
| Helbig AO, et al. (2009) A three-way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions. Proteomics 9(20):4787-98 | Large-scale protein detection |
| Hess DC, et al. (2009) Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. PLoS Genet 5(3):e1000407 | Computational analysis , Large-scale phenotype analysis |
| Hesselberth JR, et al. (2009) Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nat Methods 6(4):283-9 | Other genomic analysis |
| Hibbs MA, et al. (2009) Directing experimental biology: a case study in mitochondrial biogenesis. PLoS Comput Biol 5(3):e1000322 | Computational analysis |
| Hirasawa T, et al. (2009) Investigating the effectiveness of DNA microarray analysis for identifying the genes involved in l-lactate production by Saccharomyces cerevisiae. Appl Microbiol Biotechnol 84(6):1149-59 | Genomic expression study |
| Hjersted JL and Henson MA (2009) Steady-state and dynamic flux balance analysis of ethanol production by Saccharomyces cerevisiae. IET Syst Biol 3(3):167 | Computational analysis |
| Ho CK, et al. (2009) Identification of nucleases and phosphatases by direct biochemical screen of the Saccharomyces cerevisiae proteome. PLoS One 4(9):e6993 | Other large-scale proteomic analysis |
| Holbein S, et al. (2009) Cordycepin interferes with 3' end formation in yeast independently of its potential to terminate RNA chain elongation. RNA 15(5):837-49 | Genomic expression study , Large-scale phenotype analysis , Other genomic analysis |
| Holt LJ, et al. (2009) Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325(5948):1682-6 | Large-scale protein modification |
| Homann OR, et al. (2009) A phenotypic profile of the Candida albicans regulatory network. PLoS Genet 5(12):e1000783 | Large-scale phenotype analysis |
| Hong SW, et al. (2009) Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome. Proc Natl Acad Sci U S A 106(34):14276-80 | Computational analysis , Genomic expression study |
| Hormozdiari F, et al. (2009) The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study. J Comput Biol 16(2):159-67 | Computational analysis |
| Hosiner D, et al. (2009) Arsenic toxicity to Saccharomyces cerevisiae is a consequence of inhibition of the TORC1 kinase combined with a chronic stress response. Mol Biol Cell 20(3):1048-57 | Genomic expression study |
| Hossain MA, et al. (2009) The cap binding complex influences H2B ubiquitination by facilitating splicing of the SUS1 pre-mRNA. RNA 15(8):1515-27 | Genomic expression study |
| Hu B, et al. (2009) Mechanisms and constraints on yeast MAPK signaling specificity. Biophys J 96(12):4755-63 | Computational analysis |
