Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Gaillard H, et al. (2009) Genome-wide analysis of factors affecting transcription elongation and DNA repair: a new role for PAF and Ccr4-not in transcription-coupled repair. PLoS Genet 5(2):e1000364 | Genomic expression study , Large-scale phenotype analysis |
| Gamberi T, et al. (2009) Novel insights into phenotype and mitochondrial proteome of yeast mutants lacking proteins Sco1p or Sco2p. Mitochondrion 9(2):103-114 | Large-scale protein detection |
| Gander S, et al. (2009) A modified KESTREL search reveals a basophilic substrate consensus for the Saccharomyces cerevisiae Npr1 protein kinase. J Proteome Res 8(11):5305-16 | Large-scale protein modification |
| Garcia R, et al. (2009) The High Osmotic Response and Cell Wall Integrity Pathways Cooperate to Regulate Transcriptional Responses to Zymolyase-induced Cell Wall Stress in Saccharomyces cerevisiae. J Biol Chem 284(16):10901-11 | Genomic expression study |
| Gat-Viks I and Vingron M (2009) Evidence for gene-specific rather than transcription rate-dependent histone H3 exchange in yeast coding regions. PLoS Comput Biol 5(2):e1000282 | Computational analysis |
| Gauci S, et al. (2009) Orthogonal Separation Techniques for the Characterization of the Yeast Nuclear Proteome. J Proteome Res 8(7):3451-3463 | Large-scale protein detection |
| Gauci VJ, et al. (2009) Zinc starvation induces a stress response in Saccharomyces cerevisiae that is mediated by the Msn2p and Msn4p transcriptional activators. FEMS Yeast Res 9(8):1187-95 | Genomic expression study |
| Gelfond JA, et al. (2009) A Bayesian hidden Markov model for motif discovery through joint modeling of genomic sequence and ChIP-chip data. Biometrics 65(4):1087-95 | Computational analysis |
| Georgii E, et al. (2009) Enumeration of condition-dependent dense modules in protein interaction networks. Bioinformatics 25(7):933-40 | Computational analysis |
| Georis I, et al. (2009) The yeast GATA factor Gat1 occupies a central position in nitrogen catabolite repression-sensitive gene activation. Mol Cell Biol 29(13):3803-15 | Genomic co-immunoprecipitation study |
| Gerlee P, et al. (2009) Gene divergence and pathway duplication in the metabolic network of yeast and digital organisms. J R Soc Interface 6(41):1233-45 | Computational analysis |
| Gerstein AC and Otto SP (2009) Ploidy and the causes of genomic evolution. J Hered 100(5):571-81 | Computational analysis |
| Gertz J, et al. (2009) Analysis of combinatorial cis-regulation in synthetic and genomic promoters. Nature 457(7226):215-8 | Computational analysis |
| Ghazal G, et al. (2009) Yeast RNase III triggers polyadenylation-independent transcription termination. Mol Cell 36(1):99-109 | Genomic co-immunoprecipitation study |
| Gibson TA and Goldberg DS (2009) Reverse engineering the evolution of protein interaction networks. Pac Symp Biocomput190-202 | Computational analysis |
| Gilbert A, et al. (2009) Rapid strain improvement through optimized evolution in the cytostat. Biotechnol Bioeng 103(3):500-12 | Comparative genomic hybridization |
| Gilchrist MA, et al. (2009) Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation. Genetics 183(4):1493-505 | Computational analysis |
| Goemann B, et al. (2009) An approach to evaluate the topological significance of motifs and other patterns in regulatory networks. BMC Syst Biol 3:53 | Computational analysis |
| Goltsev Y and Papatsenko D (2009) Time warping of evolutionary distant temporal gene expression data based on noise suppression. BMC Bioinformatics 10():353 | Computational analysis |
| Goncalves JP, et al. (2009) BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data. BMC Res Notes 2:124 | Computational analysis |
| Goncalves JP, et al. (2009) POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data. J R Soc Interface 6(39):881-96 | Computational analysis |
| Gong J and Siede W (2009) SBF transcription factor complex positively regulates UV mutagenesis in Saccharomyces cerevisiae. Biochem Biophys Res Commun 379(4):1009-14 | Large-scale phenotype analysis |
| Gong Y, et al. (2009) An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell. Mol Syst Biol 5:275 | Large-scale protein interaction |
| Gopalacharyulu PV, et al. (2009) Dynamic network topology changes in functional modules predict responses to oxidative stress in yeast. Mol Biosyst 5(3):276-87 | Computational analysis |
| Goranov AI, et al. (2009) The rate of cell growth is governed by cell cycle stage. Genes Dev 23(12):1408-22 | Large-scale phenotype analysis |
| Gordan R, et al. (2009) Distinguishing direct versus indirect transcription factor-DNA interactions. Genome Res 19(11):2090-100 | Computational analysis |
| Gore J, et al. (2009) Snowdrift game dynamics and facultative cheating in yeast. Nature 459(7244):253-6 | Computational analysis |
| Gradolatto A, et al. (2009) A noncanonical bromodomain in the AAA ATPase protein Yta7 directs chromosomal positioning and barrier chromatin activity. Mol Cell Biol 29(17):4604-11 | Genomic co-immunoprecipitation study |
| Grassl J, et al. (2009) Analysis of the budding yeast pH 4-7 proteome in meiosis. Proteomics () | Large-scale protein detection |
| Griswold CK and Masel J (2009) Complex Adaptations Can Drive the Evolution of the Capacitor [PSI], Even with Realistic Rates of Yeast Sex. PLoS Genet 5(6):e1000517 | Computational analysis |
