Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Ayer A, et al. (2012) A genome-wide screen in yeast identifies specific oxidative stress genes required for the maintenance of sub-cellular redox homeostasis. PLoS One 7(9):e44278 | Large-scale phenotype analysis , Omics |
| Babbitt GA and Schulze KV (2012) Codons support the maintenance of intrinsic DNA polymer flexibility over evolutionary timescales. Genome Biol Evol 4(9):954-65 | Computational analysis , Omics |
| Babrzadeh F, et al. (2012) Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1. Mol Genet Genomics 287(6):485-94 | Omics , Other genomic analysis |
| Babu M, et al. (2012) Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae. Nature 489(7417):585-9 | Large-scale protein detection , Large-scale protein interaction , Large-scale protein localization , Omics |
| Baker A, et al. (2012) Inferring where and when replication initiates from genome-wide replication timing data. Phys Rev Lett 108(26):268101 | Computational analysis , Omics |
| Baker M (2012) Proteomics: The interaction map. Nature 484(7393):271-5 | Large-scale protein interaction , Omics |
| Baller JA, et al. (2012) A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon. Genome Res 22(4):704-13 | Omics , Other genomic analysis |
| Bandyopadhyay N, et al. (2012) Sslpred: predicting synthetic sickness lethality. Pac Symp Biocomput ():7-18 | Computational analysis , Omics |
| Barreto L, et al. (2012) The short-term response of yeast to potassium starvation. Environ Microbiol 14(11):3026-42 | Genomic expression study , Omics |
| Bastos de Oliveira FM, et al. (2012) Linking DNA replication checkpoint to MBF cell-cycle transcription reveals a distinct class of G1/S genes. EMBO J 31(7):1798-810 | Genomic expression study , Large-scale protein detection , Omics |
| Beasley-Green A, et al. (2012) A proteomics performance standard to support measurement quality in proteomics. Proteomics 12(7):923-31 | Large-scale protein detection , Omics |
| Ben-Shitrit T, et al. (2012) Systematic identification of gene annotation errors in the widely used yeast mutation collections.LID - 10.1038/nmeth.1890 [doi] Nat Methods () | Computational analysis , Large-scale phenotype analysis , Omics |
| Besozzi D, et al. (2012) The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae. EURASIP J Bioinform Syst Biol 2012(1):10 | Computational analysis , Omics |
| Bester MC, et al. (2012) Many Saccharomyces cerevisiae Cell Wall Protein Encoding Genes Are Coregulated by Mss11, but Cellular Adhesion Phenotypes Appear Only Flo Protein Dependent. G3 (Bethesda) 2(1):131-41 | Genomic expression study , Omics |
| Bhat P, et al. (2012) Computational Selection of Transcriptomics Experiments Improves Guilt-by-Association Analyses. PLoS One 7(8):e39681 | Computational analysis , Omics |
| Biliouris K, et al. (2012) Stochastic simulations of a synthetic bacteria-yeast ecosystem. BMC Syst Biol 6(1):58 | Computational analysis , Omics |
| Blackman RK, et al. (2012) Mitochondrial electron transport is the cellular target of the oncology drug elesclomol. PLoS One 7(1):e29798 | Large-scale phenotype analysis , Omics |
| Blount BA, et al. (2012) Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS One 7(3):e33279 | Computational analysis , Omics |
| Bluemlein K, et al. (2012) Pyruvate kinase is a dosage-dependent regulator of cellular amino acid homeostasis. Oncotarget 3(11):1356-69 | Large-scale protein detection , Omics |
| Bogumil D, et al. (2012) Chaperones divide yeast proteins into classes of expression level and evolutionary rate. Genome Biol Evol 4(5):618-25 | Computational analysis , Omics |
| Borchani H, et al. (2012) Markov blanket-based approach for learning multi-dimensional Bayesian network classifiers: an application to predict the European Quality of Life-5 Dimensions (EQ-5D) from the 39-item Parkinson's Disease Questionnaire (PDQ-39). J Biomed Inform 45(6):1175-84 | Computational analysis , Omics |
| Bose T, et al. (2012) Cohesin proteins promote ribosomal RNA production and protein translation in yeast and human cells. PLoS Genet 8(6):e1002749 | Genomic expression study , Omics |
| Bowsher CG and Swain PS (2012) Identifying sources of variation and the flow of information in biochemical networks. Proc Natl Acad Sci U S A 109(20):E1320-8 | Computational analysis , Omics |
| Brandman O, et al. (2012) A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress. Cell 151(5):1042-54 | Omics |
| Brar GA, et al. (2012) High-resolution view of the yeast meiotic program revealed by ribosome profiling. Science 335(6068):552-7 | Genomic expression study , Omics , Other genomic analysis |
| Breidenbach MA, et al. (2012) Mapping yeast N-glycosites with isotopically recoded glycans. Mol Cell Proteomics 11(6):M111.015339 | Large-scale protein modification , Omics |
| Bresler M, et al. (2012) Telescoper: de novo assembly of highly repetitive regions. Bioinformatics 28(18):i311-i317 | Computational analysis , Omics |
| Brogaard K, et al. (2012) A map of nucleosome positions in yeast at base-pair resolution. Nature 486(7404):496-501 | Omics , Other genomic analysis |
| Brown JC and Madhani HD (2012) Approaching the functional annotation of fungal virulence factors using cross-species genetic interaction profiling. PLoS Genet 8(12):e1003168 | Omics |
| Brush GS, et al. (2012) Yeast IME2 Functions Early in Meiosis Upstream of Cell Cycle-Regulated SBF and MBF Targets. PLoS One 7(2):e31575 | Genomic expression study , Omics |
