Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Apweiler E, et al. (2012) Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis. BMC Genomics 13(1):239 | Genomic expression study , Large-scale phenotype analysis , Omics |
| Aragon AD, et al. (2012) Genomic analysis of Saccharomyces cerevisiae isolates that grow optimally with glucose as the sole carbon source. Electrophoresis 33(23):3514-20 | Genomic expression study , Omics , Other genomic analysis |
| Arana ME, et al. (2012) Transcriptional responses to loss of RNase H2 in Saccharomyces cerevisiae. DNA Repair (Amst) 11(12):933-41 | Omics |
| Armakola M, et al. (2012) Inhibition of RNA lariat debranching enzyme suppresses TDP-43 toxicity in ALS disease models. Nat Genet 44(12):1302-9 | Omics |
| Arribas-Gil A and Romo J (2012) Robust depth-based estimation in the time warping model. Biostatistics 13(3):398-414 | Computational analysis , Omics |
| Askenazi M and Linial M (2012) Implicit biology in peptide spectral libraries. Anal Chem 84(18):7919-25 | Computational analysis , Omics |
| Avila-Elchiver M, et al. (2012) Optimality and thermodynamics determine the evolution of transcriptional regulatory networks. Mol Biosyst 8(2):511-30 | Computational analysis , Omics |
| Awad S, et al. (2012) Inferring the regulatory interaction models of transcription factors in transcriptional regulatory networks. J Bioinform Comput Biol 10(5):1250012 | Computational analysis , Omics |
| Ayadi W, et al. (2012) Pattern-driven neighborhood search for biclustering of microarray data. BMC Bioinformatics 13 Suppl 7():S11 | Computational analysis , Omics |
| Ayer A, et al. (2012) A genome-wide screen in yeast identifies specific oxidative stress genes required for the maintenance of sub-cellular redox homeostasis. PLoS One 7(9):e44278 | Large-scale phenotype analysis , Omics |
| Babbitt GA and Schulze KV (2012) Codons support the maintenance of intrinsic DNA polymer flexibility over evolutionary timescales. Genome Biol Evol 4(9):954-65 | Computational analysis , Omics |
| Babrzadeh F, et al. (2012) Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1. Mol Genet Genomics 287(6):485-94 | Omics , Other genomic analysis |
| Babu M, et al. (2012) Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae. Nature 489(7417):585-9 | Large-scale protein detection , Large-scale protein interaction , Large-scale protein localization , Omics |
| Baker A, et al. (2012) Inferring where and when replication initiates from genome-wide replication timing data. Phys Rev Lett 108(26):268101 | Computational analysis , Omics |
| Baker M (2012) Proteomics: The interaction map. Nature 484(7393):271-5 | Large-scale protein interaction , Omics |
| Baller JA, et al. (2012) A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon. Genome Res 22(4):704-13 | Omics , Other genomic analysis |
| Bandyopadhyay N, et al. (2012) Sslpred: predicting synthetic sickness lethality. Pac Symp Biocomput ():7-18 | Computational analysis , Omics |
| Barreto L, et al. (2012) The short-term response of yeast to potassium starvation. Environ Microbiol 14(11):3026-42 | Genomic expression study , Omics |
| Bastos de Oliveira FM, et al. (2012) Linking DNA replication checkpoint to MBF cell-cycle transcription reveals a distinct class of G1/S genes. EMBO J 31(7):1798-810 | Genomic expression study , Large-scale protein detection , Omics |
| Beasley-Green A, et al. (2012) A proteomics performance standard to support measurement quality in proteomics. Proteomics 12(7):923-31 | Large-scale protein detection , Omics |
| Ben-Shitrit T, et al. (2012) Systematic identification of gene annotation errors in the widely used yeast mutation collections.LID - 10.1038/nmeth.1890 [doi] Nat Methods () | Computational analysis , Large-scale phenotype analysis , Omics |
| Besozzi D, et al. (2012) The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae. EURASIP J Bioinform Syst Biol 2012(1):10 | Computational analysis , Omics |
| Bester MC, et al. (2012) Many Saccharomyces cerevisiae Cell Wall Protein Encoding Genes Are Coregulated by Mss11, but Cellular Adhesion Phenotypes Appear Only Flo Protein Dependent. G3 (Bethesda) 2(1):131-41 | Genomic expression study , Omics |
| Bhat P, et al. (2012) Computational Selection of Transcriptomics Experiments Improves Guilt-by-Association Analyses. PLoS One 7(8):e39681 | Computational analysis , Omics |
| Biliouris K, et al. (2012) Stochastic simulations of a synthetic bacteria-yeast ecosystem. BMC Syst Biol 6(1):58 | Computational analysis , Omics |
| Blackman RK, et al. (2012) Mitochondrial electron transport is the cellular target of the oncology drug elesclomol. PLoS One 7(1):e29798 | Large-scale phenotype analysis , Omics |
| Blount BA, et al. (2012) Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS One 7(3):e33279 | Computational analysis , Omics |
| Bluemlein K, et al. (2012) Pyruvate kinase is a dosage-dependent regulator of cellular amino acid homeostasis. Oncotarget 3(11):1356-69 | Large-scale protein detection , Omics |
| Bogumil D, et al. (2012) Chaperones divide yeast proteins into classes of expression level and evolutionary rate. Genome Biol Evol 4(5):618-25 | Computational analysis , Omics |
| Borchani H, et al. (2012) Markov blanket-based approach for learning multi-dimensional Bayesian network classifiers: an application to predict the European Quality of Life-5 Dimensions (EQ-5D) from the 39-item Parkinson's Disease Questionnaire (PDQ-39). J Biomed Inform 45(6):1175-84 | Computational analysis , Omics |
