Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Dutkowski J and Tiuryn J (2009) Phylogeny-guided interaction mapping in seven eukaryotes. BMC Bioinformatics 10():393 | Computational analysis |
| Duval EH, et al. (2009) Microarray karyotyping of maltose-fermenting Saccharomyces yeasts with differing maltotriose utilization profiles reveals copy number variation in genes involved in maltose and maltotriose utilization. J Appl Microbiol () | Comparative genomic hybridization |
| Ehrenreich IM, et al. (2009) Genetic Dissection of Complex Traits in Yeast: Insights from Studies of Gene Expression and Other Phenotypes in the BYxRM Cross. Cold Spring Harb Symp Quant Biol | Genomic expression study , Large-scale protein detection , Other genomic analysis |
| Ejsing CS, et al. (2009) Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry. Proc Natl Acad Sci U S A 106(7):2136-41 | Other genomic analysis |
| Ellis T, et al. (2009) Diversity-based, model-guided construction of synthetic gene networks with predicted functions. Nat Biotechnol 27(5):465-71 | Computational analysis |
| Emmert-Streib F and Dehmer M (2009) Hierarchical coordination of periodic genes in the cell cycle of Saccharomyces cerevisiae. BMC Syst Biol 3:76 | Computational analysis |
| Emmert-Streib F and Dehmer M (2009) Information processing in the transcriptional regulatory network of yeast: fnctional robustness. BMC Syst Biol 3:35 | Computational analysis |
| Faddah DA, et al. (2009) Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae. PLoS Genet 5(6):e1000502 | Comparative genomic hybridization |
| Falbo KB, et al. (2009) Involvement of a chromatin remodeling complex in damage tolerance during DNA replication. Nat Struct Mol Biol 16(11):1167-72 | Genomic co-immunoprecipitation study , Genomic expression study |
| Fan X and Struhl K (2009) Where does mediator bind in vivo? PLoS ONE 4(4):e5029 | Computational analysis , Genomic co-immunoprecipitation study |
| Fang ZA, et al. (2009) Gene responses to oxygen availability in Kluyveromyces lactis: an insight on the evolution of the oxygen-responding system in yeast. PLoS One 4(10):e7561 | Genomic expression study |
| Faure A, et al. (2009) Modular logical modelling of the budding yeast cell cycle. Mol Biosyst | Computational analysis |
| Fernandez-Ricaud L, et al. (2009) Testing of chromosomal clumping of gene properties. Stat Appl Genet Mol Biol 8(1):Article19 | Computational analysis |
| Ferrezuelo F, et al. (2009) Bck2 is a phase-independent activator of cell cycle-regulated genes in yeast. Cell Cycle 8(2):239-52 | Genomic expression study |
| Fiedler D, et al. (2009) Functional organization of the S. cerevisiae phosphorylation network. Cell 136(5):952-63 | Computational analysis |
| Field Y, et al. (2009) Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet 41(4):438-45 | Computational analysis , Genomic expression study , Other genomic analysis |
| Fillingham J, et al. (2009) Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression. Mol Cell 35(3):340-51 | Genomic co-immunoprecipitation study , Large-scale phenotype analysis |
| Fitch AM and Jones MB (2009) Shortest path analysis using partial correlations for classifying gene functions from gene expression data. Bioinformatics 25(1):42-7 | Computational analysis |
| Foat BC and Stormo GD (2009) Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs. Mol Syst Biol 5:268 | Computational analysis |
| Fokkens L and Snel B (2009) Cohesive versus flexible evolution of functional modules in eukaryotes. PLoS Comput Biol 5(1):e1000276 | Computational analysis |
| Fontana P, et al. (2009) Rapid annotation of anonymous sequences from genome projects using semantic similarities and a weighting scheme in gene ontology. PLoS ONE 4(2):e4619 | Computational analysis |
| Fornes O, et al. (2009) ModLink+: improving fold recognition by using protein-protein interactions. Bioinformatics 25(12):1506-1512 | Other large-scale proteomic analysis |
| Francois IE, et al. (2009) Membrane rafts are involved in intracellular miconazole accumulation in yeast cells. J Biol Chem 284(47):32680-5 | Large-scale phenotype analysis |
| Freckleton G, et al. (2009) Microarray profiling of phage-display selections for rapid mapping of transcription factor-DNA interactions. PLoS Genet 5(4):e1000449 | Other genomic analysis , Other large-scale proteomic analysis |
| Friedel CC, et al. (2009) Bootstrapping the interactome: unsupervised identification of protein complexes in yeast. J Comput Biol 16(8):971-87 | Computational analysis |
| Fritsch ES, et al. (2009) Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae. BMC Genomics 10:99 | Other genomic analysis |
| Fudala A and Korona R (2009) Low frequency of mutations with strongly deleterious but nonlethal fitness effects. Evolution 63(8):2164-71 | Large-scale phenotype analysis |
| Fujii K, et al. (2009) A role for ubiquitin in the clearance of nonfunctional rRNAs. Genes Dev 23(8):963-74 | Large-scale phenotype analysis |
| Gagneur J, et al. (2009) Genome-wide allele- and strand-specific expression profiling. Mol Syst Biol 5:274 | Computational analysis , Genomic expression study |
| Gahura O, et al. (2009) Prp45 affects Prp22 partition in spliceosomal complexes and splicing efficiency of non-consensus substrates. J Cell Biochem 106(1):139-51 | Large-scale genetic interaction |
