Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Conant GC and Stadler PF (2009) Solvent exposure imparts similar selective pressures across a range of yeast proteins. Mol Biol Evol 26(5):1155-61 | Computational analysis |
| Cookson NA, et al. (2009) Cell cycle-dependent variations in protein concentration. Nucleic Acids Res () | Computational analysis |
| Copic A, et al. (2009) Genomewide analysis reveals novel pathways affecting endoplasmic reticulum homeostasis, protein modification and quality control. Genetics 182(3):757-69 | Large-scale phenotype analysis |
| Courchesne WE, et al. (2009) Amiodarone induces stress responses and calcium flux mediated by the cell wall in Saccharomyces cerevisiae. Can J Microbiol 55(3):288-303 | Large-scale protein detection |
| Criscuolo A and Michel CJ (2009) Phylogenetic inference with weighted codon evolutionary distances. J Mol Evol 68(4):377-92 | Computational analysis |
| Csikasz-Nagy A, et al. (2009) Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation. Mol Syst Biol 5:236 | Computational analysis |
| Cubillos FA, et al. (2009) Self-fertilization is the main sexual reproduction mechanism in native wine yeast populations. FEMS Microbiol Ecol 67(1):162-70 | Other genomic analysis |
| Cui F and Zhurkin VB (2009) Distinctive sequence patterns in metazoan and yeast nucleosomes: implications for linker histone binding to AT-rich and methylated DNA. Nucleic Acids Res 37(9):2818-29 | Computational analysis |
| Cui J, et al. (2009) Simulating calcium influx and free calcium concentrations in yeast. Cell Calcium 45(2):123-32 | Computational analysis |
| Curk T, et al. (2009) Rule-based Clustering for Gene Promoter Structure Discovery. Methods Inf Med 48(3):229-35 | Computational analysis |
| Curwin AJ, et al. (2009) Phospholipid Transfer Protein Sec14 Is Required for Trafficking from Endosomes and Regulates Distinct trans-Golgi Export Pathways. J Biol Chem 284(11):7364-75 | Large-scale genetic interaction |
| Cusick KD, et al. (2009) Transcriptional profiling of Saccharomyces cerevisiae upon exposure to saxitoxin. Environ Sci Technol 43(15):6039-45 | Genomic expression study |
| Dai Z, et al. (2009) Genome-wide analysis of interactions between ATP-dependent chromatin remodeling and histone modifications. BMC Genomics 10:304 | Computational analysis |
| Dai Z, et al. (2009) Transcriptional interaction-assisted identification of dynamic nucleosome positioning. BMC Bioinformatics 10 Suppl 1:S31 | Computational analysis |
| Dai Z, et al. (2009) Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence. BMC Genomics 10:15 | Computational analysis |
| Dardalhon M, et al. (2009) Slt2 (Mpk1) MAP kinase is involved in the response of Saccharomyces cerevisiae to 8-methoxypsoralen plus UVA. J Photochem Photobiol B 95(3):148-55 | Large-scale phenotype analysis |
| Das S, et al. (2009) Analyzing gene expression from relative codon usage bias in Yeast genome: a statistical significance and biological relevance. Gene 443(1-2):121-31 | Genomic expression study , Other genomic analysis |
| Degiorgio M and Degnan JH (2009) Fast and consistent estimation of species trees using supermatrix rooted triples. Mol Biol Evol | Computational analysis |
| Del Mondo G, et al. (2009) Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions. Bioinformatics 25(7):926-32 | Computational analysis |
| Del Rio G, et al. (2009) How to identify essential genes from molecular networks? BMC Syst Biol 3:102 | Computational analysis |
| Desai P, et al. (2009) Plc1p is required for proper chromatin structure and activity of the kinetochore in Saccharomyces cerevisiae by facilitating recruitment of the RSC complex. Mol Genet Genomics 281(5):511-23 | Genomic co-immunoprecipitation study |
| Di Cecco L, et al. (2009) Characterisation of gene expression profiles of yeast cells expressing BRCA1 missense variants. Eur J Cancer 45(12):2187-96 | Genomic expression study |
| Di Talia S, et al. (2009) Daughter-specific transcription factors regulate cell size control in budding yeast. PLoS Biol 7(10):e1000221 | Genomic co-immunoprecipitation study , Genomic expression study |
| Diamant I, et al. (2009) A network-based method for predicting gene-nutrient interactions and its application to yeast amino-acid metabolism. Mol Biosyst | Computational analysis |
| Diaz H, et al. (2009) Global gene expression in recombinant and non-recombinant yeast Saccharomyces cerevisiae in three different metabolic states. Biotechnol Adv 27(6):1092-117 | Genomic expression study |
| Dick JM (2009) Calculation of the relative metastabilities of proteins in subcellular compartments of Saccharomyces cerevisiae. BMC Syst Biol 3:75 | Computational analysis |
| Dinh TN, et al. (2009) Analysis of adaptation to high ethanol concentration in Saccharomyces cerevisiae using DNA microarray. Bioprocess Biosyst Eng 32(5):681-8 | Genomic expression study |
| Doncic A, et al. (2009) Reverse engineering of the spindle assembly checkpoint. PLoS One 4(8):e6495 | Computational analysis |
| Dos Santos SC and Sa-Correia I (2009) Genome-Wide Identification of Genes Required for Yeast Growth Under Imatinib Stress: Vacuolar H(+)-ATPase Function Is an Important Target of This Anticancer Drug. OMICS 13(3):185-98 | Large-scale phenotype analysis |
| Draper E, et al. (2009) Dse1 may control cross talk between the pheromone and filamentation pathways in yeast. Curr Genet 55(6):611-21 | Large-scale genetic interaction |
