Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Xing YQ, et al. (2013) An analysis and prediction of nucleosome positioning based on information content. Chromosome Res 21(1):63-74 | Omics |
| Yamanishi M, et al. (2013) A Genome-Wide Activity Assessment of Terminator Regions in Saccharomyces cerevisiae Provides a ''Terminatome'' Toolbox. ACS Synth Biol () | Omics |
| Zampar GG, et al. (2013) Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast. Mol Syst Biol 9():651 | Omics |
| Zeidler U, et al. (2013) Synergy of the antibiotic colistin with echinocandin antifungals in Candida species. J Antimicrob Chemother 68(6):1285-96 | Omics |
| Zentner GE, et al. (2013) ISWI and CHD Chromatin Remodelers Bind Promoters but Act in Gene Bodies. PLoS Genet 9(2):e1003317 | Omics |
| Zhang F, et al. (2013) Allele-specific behavior of molecular networks: understanding small-molecule drug response in yeast. PLoS One 8(1):e53581 | Omics |
| Zhang L, et al. (2013) The transcriptional control machinery as well as the cell wall integrity and its regulation are involved in the detoxification of the organic solvent dimethyl sulfoxide in Saccharomyces cerevisiae. FEMS Yeast Res 13(2):200-18 | Omics |
| Zhang Y, et al. (2013) Construction of ontology augmented networks for protein complex prediction. PLoS One 8(5):e62077 | Omics |
| Zhao Y, et al. (2013) Activation of calcineurin is mainly responsible for the calcium sensitivity of gene deletion mutations in the genome of budding yeast. Genomics 101(1):49-56 | Large-scale phenotype analysis , Omics |
| de Clare M and Oliver SG (2013) Copy-number variation of cancer-gene orthologs is sufficient to induce cancer-like symptoms in Saccharomyces cerevisiae. BMC Biol 11(1):24 | Omics |
| van Bakel H, et al. (2013) A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription. PLoS Genet 9(5):e1003479 | Omics |
| van Pel DM, et al. (2013) Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork. G3 (Bethesda) 3(2):273-82 | Omics |
| Aceituno FF, et al. (2012) Oxygen response of the wine yeast Saccharomyces cerevisiae EC1118 grown under carbon-sufficient, nitrogen-limited enological conditions. Appl Environ Microbiol 78(23):8340-52 | Genomic expression study , Omics |
| Ackermann J, et al. (2012) Reduction techniques for network validation in systems biology. J Theor Biol 315():71-80 | Computational analysis , Omics |
| Adamczyk M and Westerhoff HV (2012) Engineering of self-sustaining systems: substituting the yeast glucose transporter plus hexokinase for the Lactococcus lactis phosphotransferase system in a Lactococcus lactis network in silico. Biotechnol J 7(7):877-83 | Computational analysis , Omics |
| Afek A and Lukatsky DB (2012) Nonspecific Protein-DNA Binding Is Widespread in the Yeast Genome. Biophys J 102(8):1881-8 | Computational analysis , Omics |
| Agier N and Fischer G (2012) The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol 29(3):905-13 | Omics , Other genomic analysis |
| Aguilar D and Oliva B (2012) Functional and topological characterization of transcriptional cooperativity in yeast. BMC Res Notes 5(1):227 | Computational analysis , Omics |
| Ai HW (2012) Biochemical analysis with the expanded genetic lexicon. Anal Bioanal Chem 403(8):2089-102 | Omics , Other large-scale proteomic analysis |
| Albulescu LO, et al. (2012) A Quantitative, High-Throughput Reverse Genetic Screen Reveals Novel Connections between Pre-mRNA Splicing and 5' and 3' End Transcript Determinants. PLoS Genet 8(3):e1002530 | Genomic expression study , Omics |
| Alex D, et al. (2012) Amino acid-derived 1,2-benzisothiazolinone derivatives as novel small-molecule antifungal inhibitors: identification of potential genetic targets. Antimicrob Agents Chemother 56(9):4630-9 | Large-scale phenotype analysis , Omics |
| Ali A, et al. (2012) Reproduction-time statistics and segregation patterns in growing populations. Phys Rev E Stat Nonlin Soft Matter Phys 85(2-1):021923 | Computational analysis , Omics |
| Altenhoff AM, et al. (2012) Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs. PLoS Comput Biol 8(5):e1002514 | Computational analysis , Omics |
| Alzu A, et al. (2012) Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes. Cell 151(4):835-46 | Omics |
| Ambroise J, et al. (2012) Transcriptional network inference from functional similarity and expression data: a global supervised approach. Stat Appl Genet Mol Biol 11(1):1-24 | Computational analysis , Omics |
| Amillastre E, et al. (2012) Dynamic model of temperature impact on cell viability and major product formation during fed-batch and continuous ethanolic fermentation in Saccharomyces cerevisiae. Bioresour Technol 117():242-50 | Computational analysis , Omics |
| Amoutzias GD, et al. (2012) Evaluation and properties of the budding yeast phosphoproteome. Mol Cell Proteomics 11(6):M111.009555 | Large-scale protein modification , Omics |
| Anderson MJ, et al. (2012) Identification of RCN1 and RSA3 as ethanol-tolerant genes in Saccharomyces cerevisiae using a high copy barcoded library. FEMS Yeast Res 12(1):48-60 | Large-scale phenotype analysis , Omics |
| Andrews SS (2012) Spatial and stochastic cellular modeling with the smoldyn simulator. Methods Mol Biol 804():519-42 | Computational analysis , Omics |
| Angermann BR, et al. (2012) Computational modeling of cellular signaling processes embedded into dynamic spatial contexts.LID - 10.1038/nmeth.1861 [doi] Nat Methods () | Computational analysis , Omics |
