Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Callister SJ, et al. (2009) Relating perturbation magnitude to temporal gene expression in biological systems. BMC Res Notes 2:43 | Genomic expression study |
| Campiteli MG, et al. (2009) A reliable measure of similarity based on dependency for short time series: an application to gene expression networks. BMC Bioinformatics 10:270 | Computational analysis |
| Cantone I, et al. (2009) A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches. Cell 137(1):172-81 | Computational analysis |
| Cao W, et al. (2009) Using a new GPI-anchored-protein identification system to mine the protein databases of Aspergillus fumigatus, Aspergillus nidulans, and Aspergillus oryzae. J Gen Appl Microbiol 55(5):381-93 | Computational analysis |
| Cardona F, et al. (2009) Ubiquitin ligase Rsp5p is involved in the gene expression changes during nutrient limitation in Saccharomyces cerevisiae. Yeast 26(1):1-15 | Genomic expression study |
| Carmi S, et al. (2009) Efficiency of complex production in changing environment. BMC Syst Biol 3:3 | Computational analysis |
| Carter GW, et al. (2009) Maximal extraction of biological information from genetic interaction data. PLoS Comput Biol 5(4):e1000347 | Computational analysis |
| Casper AM, et al. (2009) Chromosome aberrations resulting from double-strand DNA breaks at a naturally occurring yeast fragile site composed of inverted ty elements are independent of Mre11p and Sae2p. Genetics 183(2):423-39, 1SI-26SI | Other genomic analysis |
| Cavalieri D, et al. (2009) Filling gaps in PPAR-alpha signaling through comparative nutrigenomics analysis. BMC Genomics 10():596 | Computational analysis |
| Charvin G, et al. (2009) Forced periodic expression of G1 cyclins phase-locks the budding yeast cell cycle. Proc Natl Acad Sci U S A 106(16):6632-7 | Computational analysis |
| Chatterjee S, et al. (2009) A simple and robust algorithm for microarray data clustering based on gene population-variance ratio metric. Biotechnol J 4(9):1357-61 | Computational analysis |
| Chattopadhyay MK, et al. (2009) Microarray studies on the genes responsive to the addition of spermidine or spermine to a Saccharomyces cerevisiae spermidine synthase mutant. Yeast 26(10):531-44 | Genomic expression study |
| Chen AK, et al. (2009) Response of Saccharomyces cerevisiae to stress-free acidification. J Microbiol 47(1):1-8 | Genomic expression study |
| Chen BJ, et al. (2009) Harnessing gene expression to identify the genetic basis of drug resistance. Mol Syst Biol 5():310 | Computational analysis |
| Chen L, et al. (2009) Identifying protein complexes using hybrid properties. J Proteome Res 8(11):5212-8 | Computational analysis |
| Chen S, et al. (2009) Mechanism of ATP-driven PCNA clamp loading by S. cerevisiae RFC. J Mol Biol 388(3):431-42 | Computational analysis |
| Chen SF, et al. (2009) Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis. BMC Syst Biol 3(1):110 | Computational analysis |
| Chen T and Li F (2009) Identifying cell cycle regulators and combinatorial interactions among transcription factors with microarray data and ChIP-chip data. Int J Bioinform Res Appl 5(6):625-46 | Computational analysis |
| Chen X (2009) Curve-based clustering of time course gene expression data using self-organizing maps. J Bioinform Comput Biol 7(4):645-61 | Computational analysis |
| Cheng JS, et al. (2009) Inoculation-density-dependent responses and pathway shifts in Saccharomyces cerevisiae. Proteomics 9(20):4704-13 | Large-scale protein detection |
| Cheng JS, et al. (2009) Proteomic insights into adaptive responses of Saccharomyces cerevisiae to the repeated vacuum fermentation. Appl Microbiol Biotechnol 83(5):909-23 | Large-scale protein detection |
| Chipman KC and Singh AK (2009) Predicting genetic interactions with random walks on biological networks. BMC Bioinformatics 10:17 | Computational analysis |
| Choi JK and Kim YJ (2009) Implications of the nucleosome code in regulatory variation, adaptation and evolution. Epigenetics 4(5):291-5 | Computational analysis |
| Christensen TS, et al. (2009) Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae. BMC Syst Biol 3:7 | Computational analysis |
| Chua HN, et al. (2009) A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge. Ann N Y Acad Sci 1158:224-33 | Computational analysis , Large-scale protein interaction |
| Chuang CL, et al. (2009) A robust correlation estimator and nonlinear recurrent model to infer genetic interactions in Saccharomyces cerevisiae and pathways of pulmonary disease in Homo sapiens. Biosystems 98(3):160-75 | Computational analysis |
| Chuang CL, et al. (2009) Uncovering transcriptional interactions via an adaptive fuzzy logic approach. BMC Bioinformatics 10():400 | Computational analysis |
| Chuang CL, et al. (2009) WebPARE: Web-computing for inferring genetic or transcriptional interactions. Bioinformatics () | Computational analysis |
| Cimini D, et al. (2009) Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3. BMC Syst Biol 3:17 | Computational analysis , Genomic expression study |
| Conant GC (2009) Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast. Proc Biol Sci () | Computational analysis |
