Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Banuelos MG, et al. (2009) Genomic analysis of severe hypersensitivity to hygromycin B reveals linkage to vacuolar defects and new vacuolar gene functions in Saccharomyces cerevisiae. Curr Genet () | Large-scale phenotype analysis |
| Banumathy G, et al. (2009) Human UBN1 is an ortholog of yeast Hpc2p and has an essential role in the HIRA/ASF1a chromatin-remodeling pathway in senescent cells. Mol Cell Biol 29(3):758-70 | Computational analysis |
| Barea F and Bonatto D (2009) Aging defined by a chronologic-replicative protein network in Saccharomyces cerevisiae: an interactome analysis. Mech Ageing Dev 130(7):444-60 | Computational analysis |
| Bartra E, et al. (2009) Differential expression of thiamine biosynthetic genes in yeast strains with high and low production of hydrogen sulfide during wine fermentation. J Appl Microbiol () | Genomic expression study |
| Basu A, et al. (2009) Proteome-wide prediction of acetylation substrates. Proc Natl Acad Sci U S A 106(33):13785-90 | Computational analysis |
| Baudouin-Cornu P, et al. (2009) Development of a new method for absolute protein quantification on 2-D gels. Proteomics 9(20):4606-15 | Large-scale protein detection , Other large-scale proteomic analysis |
| Belloch C, et al. (2009) Chimeric genomes of natural hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii. Appl Environ Microbiol 75(8):2534-44 | Comparative genomic hybridization |
| Benbadis L, et al. (2009) Isolation of two cell populations from yeast during high-level alcoholic fermentation that resemble quiescent and nonquiescent cells from the stationary phase on glucose. FEMS Yeast Res 9(8):1172-86 | Genomic expression study |
| Bhardwaj N and Lu H (2009) Co-expression among constituents of a motif in the protein-protein interaction network. J Bioinform Comput Biol 7(1):1-17 | Computational analysis |
| Bhattacharjee A, et al. (2009) In vivo protein tyrosine nitration in S. cerevisiae: Identification of tyrosine-nitrated proteins in mitochondria. Biochem Biophys Res Commun 388(3):612-7 | Large-scale protein modification |
| Bi X, et al. (2009) The global gene expression profile of the model fungus Saccharomyces cerevisiae induced by thymol. J Appl Microbiol | Genomic expression study |
| Bianconi G, et al. (2009) Assessing the relevance of node features for network structure. Proc Natl Acad Sci U S A 106(28):11433-8 | Computational analysis |
| Bivi N, et al. (2009) Identification of secondary targets of N-containing bisphosphonates in mammalian cells via parallel competition analysis of the barcoded yeast deletion collection. Genome Biol 10(9):R93 | Large-scale phenotype analysis |
| Bloom JS, et al. (2009) Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics 10:221 | Genomic expression study |
| Borde V, et al. (2009) Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. EMBO J 28(2):99-111 | Genomic co-immunoprecipitation study , Genomic expression study , Other genomic analysis |
| Bourens M, et al. (2009) Mutations in the Saccharomyces cerevisiae kinase Cbk1p lead to a fertility defect that can be suppressed by the absence of Brr1p or Mpt5p (Puf5p), proteins involved in RNA metabolism. Genetics 183(1):161-73 | Genomic expression study |
| Bourgon R, et al. (2009) Array-based genotyping in S.cerevisiae using semi-supervised clustering. Bioinformatics 25(8):1056-62 | Computational analysis |
| Braconi D, et al. (2009) Proteomics and Redox-Proteomics of the Effects of Herbicides on a Wild-Type Wine Saccharomyces cerevisiae Strain. J Proteome Res 8(1):256-67 | Large-scale protein detection |
| Bradley PH, et al. (2009) Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae. PLoS Comput Biol 5(1):e1000270 | Computational analysis |
| Brady A, et al. (2009) Fault tolerance in protein interaction networks: stable bipartite subgraphs and redundant pathways. PLoS ONE 4(4):e5364 | Computational analysis |
| Braun RJ, et al. (2009) 16-BAC/SDS-PAGE Analysis of Membrane Proteins of Yeast Mitochondria Purified by Free Flow Electrophoresis. Methods Mol Biol 528:83-107 | Large-scale protein detection |
| Briones MR and Bosco F (2009) Decoherence in yeast cell populations and its implications for genome-wide expression noise. Genet Mol Res 8(1):47-51 | Computational analysis |
| Brown JC and Lindquist S (2009) A heritable switch in carbon source utilization driven by an unusual yeast prion. Genes Dev 23(19):2320-32 | Genomic expression study , Large-scale phenotype analysis |
| Bruckmann A, et al. (2009) Proteome analysis of aerobically and anaerobically grown Saccharomyces cerevisiae cells. J Proteomics 71(6):662-9 | Large-scale protein detection |
| Buchler NE and Cross FR (2009) Protein sequestration generates a flexible ultrasensitive response in a genetic network. Mol Syst Biol 5:272 | Computational analysis , Other genomic analysis |
| Buetti-Dinh A, et al. (2009) Control and signal processing by transcriptional interference. Mol Syst Biol 5:300 | Computational analysis |
| Bumgarner SL, et al. (2009) Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast. Proc Natl Acad Sci U S A 106(43):18321-6 | Genomic co-immunoprecipitation study |
| Burston HE, et al. (2009) Regulators of yeast endocytosis identified by systematic quantitative analysis. J Cell Biol 185(6):1097-110 | Large-scale genetic interaction , Large-scale phenotype analysis |
| Byrne LJ, et al. (2009) The number and transmission of [PSI] prion seeds (Propagons) in the yeast Saccharomyces cerevisiae. PLoS ONE 4(3):e4670 | Computational analysis |
| Cagney G (2009) Interaction networks: lessons from large-scale studies in yeast. Proteomics 9(20):4799-811 | Computational analysis |
