Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Weiner A, et al. (2010) High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res 20(1):90-100 | Computational analysis , Other genomic analysis |
| Woehrmann MH, et al. (2010) HALO384: A Halo-Based Potency Prediction Algorithm for High-Throughput Detection of Antimicrobial Agents. J Biomol Screen 15(2):196-205 | Computational analysis |
| Wuster A and Babu MM (2010) Transcriptional control of the quorum sensing response in yeast. Mol Biosyst 6(1):124-31 | Computational analysis |
| Xulvi-Brunet R and Li H (2010) Co-expression networks: graph properties and topological comparisons. Bioinformatics 26(2):205-14 | Computational analysis |
| Zeng T and Li J (2010) Maximization of negative correlations in time-course gene expression data for enhancing understanding of molecular pathways. Nucleic Acids Res 38(1):e1 | Computational analysis |
| Zhang W, et al. (2010) A Bayesian Partition Method for Detecting Pleiotropic and Epistatic eQTL Modules. PLoS Comput Biol 6(1):e1000642 | Computational analysis |
| Abe H, et al. (2009) Upregulation of genes involved in gluconeogenesis and the glyoxylate cycle suppressed the drug sensitivity of an N-glycan-deficient Saccharomyces cerevisiae mutant. Biosci Biotechnol Biochem 73(6):1398-403 | Genomic expression study |
| Acencio ML and Lemke N (2009) Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information. BMC Bioinformatics 10:290 | Computational analysis |
| Adachi M and Cavalcanti AR (2009) Tandem stop codons in ciliates that reassign stop codons. J Mol Evol 68(4):424-31 | Other genomic analysis |
| Aerts AM, et al. (2009) Mitochondrial dysfunction leads to reduced chronological lifespan and increased apoptosis in yeast. FEBS Lett 583(1):113-7 | Genomic expression study |
| Airoldi EM, et al. (2009) Predicting cellular growth from gene expression signatures. PLoS Comput Biol 5(1):e1000257 | Computational analysis |
| Akerborg O, et al. (2009) Simultaneous Bayesian gene tree reconstruction and reconciliation analysis. Proc Natl Acad Sci U S A 106(14):5714-9 | Computational analysis |
| Alberghina L, et al. (2009) Systems biology of the cell cycle of Saccharomyces cerevisiae: From network mining to system-level properties. Biotechnol Adv 27(6):960-78 | Computational analysis |
| Alberti S, et al. (2009) A systematic survey identifies prions and illuminates sequence features of prionogenic proteins. Cell 137(1):146-58 | Computational analysis |
| Alejandro-Osorio AL, et al. (2009) The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress. Genome Biol 10(5):R57 | Genomic expression study |
| Ammar R, et al. (2009) A comparative analysis of DNA barcode microarray feature size. BMC Genomics 10:471 | Comparative genomic hybridization |
| Amoutzias GD, et al. (2009) Posttranslational regulation impacts the fate of duplicated genes. Proc Natl Acad Sci U S A () | Computational analysis , Large-scale protein modification |
| Anand VC, et al. (2009) Genome-wide analysis of AP-3-dependent protein transport in yeast. Mol Biol Cell 20(5):1592-604 | Large-scale phenotype analysis |
| Anderson JB, et al. (2009) Gene expression and evolution of antifungal drug resistance. Antimicrob Agents Chemother 53(5):1931-6 | Genomic expression study |
| Annan RB, et al. (2009) A biochemical genomics screen for substrates of Ste20p kinase enables the in silico prediction of novel substrates. PLoS One 4(12):e8279 | Computational analysis , Large-scale protein modification |
| Arita A, et al. (2009) A genome-wide deletion mutant screen identifies pathways affected by nickel sulfate in Saccharomyces cerevisiae. BMC Genomics 10():524 | Computational analysis , Large-scale phenotype analysis |
| Arnaud MB, et al. (2009) Gene Ontology and the annotation of pathogen genomes: the case of Candida albicans. Trends Microbiol 17(7):295-303 | Computational analysis |
| Arnesen T, et al. (2009) Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans. Proc Natl Acad Sci U S A 106(20):8157-62 | Large-scale protein modification |
| Asadollahi MA, et al. (2009) Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering. Metab Eng 11(6):328-34 | Computational analysis |
| Auesukaree C, et al. (2009) Genome-wide identification of genes involved in tolerance to various environmental stresses in Saccharomyces cerevisiae. J Appl Genet 50(3):301-310 | Large-scale phenotype analysis |
| Ay F, et al. (2009) Scalable steady state analysis of boolean biological regulatory networks. PLoS One 4(12):e7992 | Computational analysis |
| Azzouz N, et al. (2009) Specific roles for the Ccr4-Not complex subunits in expression of the genome. RNA 15(3):377-83 | Genomic expression study |
| Bachman P and Liu Y (2009) Structure discovery in PPI networks using pattern-based network decomposition. Bioinformatics 25(14):1814-1821 | Computational analysis |
| Baldwin M, et al. (2009) Analyzing top2 distribution on yeast chromosomes by chromatin immunoprecipitation. Methods Mol Biol 582:119-30 | Genomic co-immunoprecipitation study |
| Bando M, et al. (2009) Csm3, Tof1, and Mrc1 form a heterotrimeric mediator complex that associates with DNA replication forks. J Biol Chem 284(49):34355-65 | Genomic co-immunoprecipitation study |
