Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Roth AC (2012) Decoding properties of tRNA leave a detectable signal in codon usage bias. Bioinformatics 28(18):i340-i348 | Computational analysis , Omics |
| Rue-Albrecht K, et al. (2012) Correlation of disorder between S. cerevisiae interacting proteins. Mol Biosyst 8(1):417-25 | Computational analysis , Omics |
| Rupwate SD, et al. (2012) Regulation of lipid biosynthesis by phosphatidylinositol-specific phospholipase C through the transcriptional repression of upstream activating sequence inositol containing genes. FEBS Lett 586(10):1555-60 | Genomic expression study , Omics |
| Ruths T and Nakhleh L (2012) ncDNA and drift drive binding site accumulation. BMC Evol Biol 12(1):159 | Computational analysis , Omics , Other genomic analysis |
| Ryan CJ, et al. (2012) Hierarchical Modularity and the Evolution of Genetic Interactomes across Species. Mol Cell 46(5):691-704 | Computational analysis , Omics |
| Ryan O, et al. (2012) Global gene deletion analysis exploring yeast filamentous growth. Science 337(6100):1353-6 | Large-scale genetic interaction , Omics |
| Rybarsch M and Bornholdt S (2012) Binary threshold networks as a natural null model for biological networks. Phys Rev E Stat Nonlin Soft Matter Phys 86(2-2):026114 | Computational analysis , Omics |
| Saa PA, et al. (2012) Modeling oxygen dissolution and biological uptake during pulse oxygen additions in oenological fermentations. Bioprocess Biosyst Eng 35(7):1167-78 | Computational analysis , Omics |
| Salari R, et al. (2012) Teasing apart translational and transcriptional components of stochastic variations in eukaryotic gene expression. PLoS Comput Biol 8(8):e1002644 | Computational analysis , Omics |
| Sanz AB, et al. (2012) Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway. Mol Biol Cell 23(14):2805-17 | Genomic expression study , Large-scale phenotype analysis , Omics |
| Sarac OS, et al. (2012) Topology of functional networks predicts physical binding of proteins. Bioinformatics 28(16):2137-45 | Computational analysis , Omics |
| Savage NS, et al. (2012) Mechanistic mathematical model of polarity in yeast. Mol Biol Cell 23(10):1998-2013 | Computational analysis , Omics |
| Schaber J, et al. (2012) Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast. Mol Syst Biol 8():622 | Computational analysis , Omics |
| Scherrer MP, et al. (2012) Modeling coding-sequence evolution within the context of residue solvent accessibility. BMC Evol Biol 12(1):179 | Computational analysis , Omics |
| Schilling V, et al. (2012) Genetic interactions of yeast NEP1 (EMG1), encoding an essential factor in ribosome biogenesis. Yeast 29(5):167-83 | Large-scale genetic interaction , Omics |
| Schlatter ID, et al. (2012) MHO1, an Evolutionarily Conserved Gene, Is Synthetic Lethal with PLC1; Mho1p Has a Role in Invasive Growth. PLoS One 7(3):e32501 | Large-scale genetic interaction , Omics |
| Schlecht U, et al. (2012) Cationic amphiphilic drugs are potent inhibitors of yeast sporulation. PLoS One 7(8):e42853 | Genomic expression study , Large-scale phenotype analysis , Omics |
| Schlecht U, et al. (2012) Multiplex assay for condition-dependent changes in protein-protein interactions. Proc Natl Acad Sci U S A 109(23):9213-8 | Large-scale protein interaction , Omics |
| Schleiffer A, et al. (2012) CENP-T proteins are conserved centromere receptors of the Ndc80 complex. Nat Cell Biol 14(6):604-13 | Genomic co-immunoprecipitation study , Omics |
| Schmid M, et al. (2012) Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins. Mol Cell 47(2):267-80 | Genomic expression study , Omics |
| Schneider C, et al. (2012) Transcriptome-wide analysis of exosome targets. Mol Cell 48(3):422-33 | Genomic expression study , Omics , Other genomic analysis |
| Schopke B and Zeng AP (2012) Inference of responsive metabolic pathways from time-series transcriptomic data with consideration of the metabolic network structure. Integr Biol (Camb) 4(8):889-96 | Computational analysis , Omics |
| Schreiber TB, et al. (2012) Global analysis of phosphoproteome regulation by the Ser/Thr phosphatase Ppt1 in Saccharomyces cerevisiae. J Proteome Res 11(4):2397-408 | Large-scale protein modification , Omics |
| Schwalb B, et al. (2012) Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA). Bioinformatics 28(6):884-5 | Computational analysis , Omics |
| Semplice M, et al. (2012) A bistable model of cell polarity. PLoS One 7(2):e30977 | Computational analysis , Omics |
| Servant G, et al. (2012) Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress. Nucleic Acids Res 40(12):5271-82 | Genomic expression study , Omics |
| Serviene E, et al. (2012) Screening the budding yeast genome reveals unique factors affecting K2 toxin susceptibility. PLoS One 7(12):e50779 | Omics |
| Sharifpoor S, et al. (2012) Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs. Genome Res 22(4):791-801 | Computational analysis , Large-scale genetic interaction , Omics |
| Sharon E, et al. (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.LID - 10.1038/nbt.2205 [doi] Nat Biotechnol () | Genomic expression study , Omics , Other genomic analysis |
| Sheltzer JM, et al. (2012) Transcriptional consequences of aneuploidy. Proc Natl Acad Sci U S A 109(31):12644-9 | Genomic expression study , Omics |
