Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Pozo C, et al. (2012) Identifying the Preferred Subset of Enzymatic Profiles in Nonlinear Kinetic Metabolic Models via Multiobjective Global Optimization and Pareto Filters. PLoS One 7(9):e43487 | Computational analysis , Omics |
| Proux-Wera E, et al. (2012) A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach. BMC Bioinformatics 13(1):237 | Computational analysis , Omics |
| Prunuske AJ, et al. (2012) Role for the molecular chaperones Zuo1 and Ssz1 in quorum sensing via activation of the transcription factor Pdr1. Proc Natl Acad Sci U S A 109(2):472-7 | Genomic co-immunoprecipitation study , Genomic expression study , Omics |
| Psakhye I and Jentsch S (2012) Protein group modification and synergy in the SUMO pathway as exemplified in DNA repair. Cell 151(4):807-20 | Omics |
| Pultz D, et al. (2012) Global mapping of protein phosphorylation events identifies Ste20, Sch9 and the cell-cycle regulatory kinases Cdc28/Pho85 as mediators of fatty acid starvation responses in Saccharomyces cerevisiae. Mol Biosyst 8(3):796-803 | Computational analysis , Large-scale protein detection , Omics |
| Putnam CD, et al. (2012) Bioinformatic identification of genes suppressing genome instability. Proc Natl Acad Sci U S A 109(47):E3251-9 | Omics |
| Qi J and Michoel T (2012) Context-specific transcriptional regulatory network inference from global gene expression maps using double two-way t-tests. Bioinformatics 28(18):2325-32 | Computational analysis , Omics |
| Qi J, et al. (2012) An integrative approach to infer regulation programs in a transcription regulatory module network. J Biomed Biotechnol 2012():245968 | Computational analysis , Omics |
| Qi X, et al. (2012) A Variational Model for Oligomer-Formation Process of GNNQQNY Peptide from Yeast Prion Protein Sup35. Biophys J 102(3):597-605 | Computational analysis , Omics |
| Qian W, et al. (2012) Balanced codon usage optimizes eukaryotic translational efficiency. PLoS Genet 8(3):e1002603 | Computational analysis , Omics |
| Qian W, et al. (2012) The genomic landscape and evolutionary resolution of antagonistic pleiotropy in yeast. Cell Rep 2(5):1399-410 | Omics |
| Qin G and Gao L (2012) An algorithm for network motif discovery in biological networks. Int J Data Min Bioinform 6(1):1-16 | Computational analysis , Omics |
| Query CC and Konarska MM (2012) CEF1/CDC5 alleles modulate transitions between catalytic conformations of the spliceosome. RNA 18(5):1001-13 | Large-scale genetic interaction , Omics |
| Radman-Livaja M, et al. (2012) A key role for chd1 in histone h3 dynamics at the 3' ends of long genes in yeast. PLoS Genet 8(7):e1002811 | Genomic co-immunoprecipitation study , Omics |
| Ralser M, et al. (2012) The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt. Open Biol 2(8):120093 | Omics , Other genomic analysis |
| Ramazzotti M, et al. (2012) A computational pipeline to discover highly phylogenetically informative genes in sequenced genomes: application to Saccharomyces cerevisiae natural strains. Nucleic Acids Res 40(9):3834-48 | Computational analysis , Omics |
| Ramirez-Cordova J, et al. (2012) Transcriptome analysis identifies genes involved in ethanol response of Saccharomyces cerevisiae in Agave tequilana juice. Antonie Van Leeuwenhoek 102(2):247-55 | Genomic expression study , Omics |
| Rashidi A, et al. (2012) EvolutionEvolution of Asymmetric Damagedamage Segregationsegregation: A Modelling Approach. Subcell Biochem 57():315-30 | Computational analysis , Omics |
| Ratushny AV, et al. (2012) Asymmetric positive feedback loops reliably control biological responses. Mol Syst Biol 8():577 | Computational analysis , Omics |
| Ray S, et al. (2012) A weighted power framework for integrating multisource information: gene function prediction in yeast. IEEE Trans Biomed Eng 59(4):1162-8 | Computational analysis , Omics |
| Reimand J, et al. (2012) m:Explorer - multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence. Genome Biol 13(6):R55 | Computational analysis , Omics |
| Reiter W, et al. (2012) Validation of regulated protein phosphorylation events in yeast by quantitative mass spectrometry analysis of purified proteins. Proteomics 12(19-20):3030-43 | Omics |
| Rest JS, et al. (2012) Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast. PLoS One 7(2):e32274 | Computational analysis , Omics |
| Rhee HS and Pugh BF (2012) Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 483(7389):295-301 | Genomic co-immunoprecipitation study , Omics |
| Rincon Hidalgo MM and Ruiz-Medina MD (2012) Local wavelet-vaguelette-based functional classification of gene expression data. Biom J 54(1):75-93 | Computational analysis , Omics |
| Riposo J and Mozziconacci J (2012) Nucleosome positioning and nucleosome stacking: two faces of the same coin. Mol Biosyst 8(4):1172-8 | Computational analysis , Omics |
| Risler JK, et al. (2012) Host co-factors of the retrovirus-like transposon Ty1. Mob DNA 3(1):12 | Large-scale genetic interaction , Omics |
| Rito T, et al. (2012) The importance of age and high degree, in protein-protein interaction networks. J Comput Biol 19(6):785-95 | Computational analysis , Omics |
| Rizzardi LF, et al. (2012) DNA replication origin function is promoted by H3K4 di-methylation in Saccharomyces cerevisiae. Genetics 192(2):371-84 | Large-scale genetic interaction , Omics |
| Roberts SA, et al. (2012) Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions. Mol Cell 46(4):424-35 | Omics , Other genomic analysis |
