Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Pavlidis S, et al. (2012) Pathway based microarray analysis, utilising enzyme compounds and cascade events. Methods Inf Med 51(4):323-31 | Computational analysis , Omics |
| Pedersen JM, et al. (2012) DNA Topoisomerases Maintain Promoters in a State Competent for Transcriptional Activation in Saccharomyces cerevisiae. PLoS Genet 8(12):e1003128 | Omics |
| Pedone F and Santoni D (2012) Preferential nucleosome occupancy at high values of DNA helical rise. DNA Res 19(1):81-90 | Computational analysis , Omics |
| Peixoto TP (2012) Emergence of robustness against noise: A structural phase transition in evolved models of gene regulatory networks. Phys Rev E Stat Nonlin Soft Matter Phys 85(4-1):041908 | Computational analysis , Omics |
| Pelet S, et al. (2012) An integrated image analysis platform to quantify signal transduction in single cells. Integr Biol (Camb) 4(10):1274-82 | Computational analysis , Omics |
| Penacho V, et al. (2012) Transcription profiling of sparkling wine second fermentation. Int J Food Microbiol 153(1-2):176-82 | Genomic expression study , Omics |
| Penfold CA, et al. (2012) Modeling meiotic chromosomes indicates a size dependent contribution of telomere clustering and chromosome rigidity to homologue juxtaposition. PLoS Comput Biol 8(5):e1002496 | Computational analysis , Omics |
| Peng CH, et al. (2012) Feature Identification of Compensatory Gene Pairs without Sequence Homology in Yeast. Comp Funct Genomics 2012():653174 | Computational analysis , Omics |
| Peng W, et al. (2012) Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks. BMC Syst Biol 6(1):87 | Computational analysis , Omics |
| Peris D, et al. (2012) Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13(1):407 | Comparative genomic hybridization , Omics |
| Peters TW, et al. (2012) Tor1 regulates protein solubility in Saccharomyces cerevisiae. Mol Biol Cell 23(24):4679-88 | Omics |
| Peterson AC, et al. (2012) Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics. Mol Cell Proteomics 11(11):1475-88 | Omics , Other large-scale proteomic analysis |
| Peterson GJ, et al. (2012) Simulated evolution of protein-protein interaction networks with realistic topology. PLoS One 7(6):e39052 | Computational analysis , Large-scale protein interaction , Omics |
| Petti AA, et al. (2012) Combinatorial control of diverse metabolic and physiological functions by transcriptional regulators of the yeast sulfur assimilation pathway. Mol Biol Cell 23(15):3008-24 | Genomic expression study , Omics |
| Peyroche G, et al. (2012) Sodium selenide toxicity is mediated by O2-dependent DNA breaks. PLoS One 7(5):e36343 | Large-scale phenotype analysis , Omics |
| Phan HT and Sternberg MJ (2012) PINALOG: a novel approach to align protein interaction networks--implications for complex detection and function prediction. Bioinformatics 28(9):1239-45 | Computational analysis , Omics |
| Pimentel C, et al. (2012) The role of the yap5 transcription factor in remodeling gene expression in response to fe bioavailability. PLoS One 7(5):e37434 | Genomic expression study , Omics |
| Pir P, et al. (2012) The genetic control of growth rate: a systems biology study in yeast. BMC Syst Biol 6(1):4 | Large-scale phenotype analysis , Omics |
| Piras V, et al. (2012) Is central dogma a global property of cellular information flow? Front Physiol 3():439 | Omics |
| Plass M, et al. (2012) RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiae. RNA 18(6):1103-15 | Computational analysis , Omics |
| Poschke H, et al. (2012) Rif2 Promotes a Telomere Fold-Back Structure through Rpd3L Recruitment in Budding Yeast. PLoS Genet 8(9):e1002960 | Large-scale phenotype analysis , Omics |
| Poulsen JW, et al. (2012) Comprehensive profiling of proteome changes upon sequential deletion of deubiquitylating enzymes. J Proteomics 75(13):3886-97 | Large-scale protein detection , Omics , Other large-scale proteomic analysis |
| Pozo C, et al. (2012) Identifying the Preferred Subset of Enzymatic Profiles in Nonlinear Kinetic Metabolic Models via Multiobjective Global Optimization and Pareto Filters. PLoS One 7(9):e43487 | Computational analysis , Omics |
| Proux-Wera E, et al. (2012) A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach. BMC Bioinformatics 13(1):237 | Computational analysis , Omics |
| Prunuske AJ, et al. (2012) Role for the molecular chaperones Zuo1 and Ssz1 in quorum sensing via activation of the transcription factor Pdr1. Proc Natl Acad Sci U S A 109(2):472-7 | Genomic co-immunoprecipitation study , Genomic expression study , Omics |
| Psakhye I and Jentsch S (2012) Protein group modification and synergy in the SUMO pathway as exemplified in DNA repair. Cell 151(4):807-20 | Omics |
| Pultz D, et al. (2012) Global mapping of protein phosphorylation events identifies Ste20, Sch9 and the cell-cycle regulatory kinases Cdc28/Pho85 as mediators of fatty acid starvation responses in Saccharomyces cerevisiae. Mol Biosyst 8(3):796-803 | Computational analysis , Large-scale protein detection , Omics |
| Putnam CD, et al. (2012) Bioinformatic identification of genes suppressing genome instability. Proc Natl Acad Sci U S A 109(47):E3251-9 | Omics |
| Qi J and Michoel T (2012) Context-specific transcriptional regulatory network inference from global gene expression maps using double two-way t-tests. Bioinformatics 28(18):2325-32 | Computational analysis , Omics |
| Qi J, et al. (2012) An integrative approach to infer regulation programs in a transcription regulatory module network. J Biomed Biotechnol 2012():245968 | Computational analysis , Omics |
