Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Joshi RS, et al. (2010) Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes. EMBO J () | Genomic expression study |
| Kiddle SJ, et al. (2010) Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana. Bioinformatics 26(3):355-62 | Computational analysis |
| Kim JH, et al. (2010) Oxidative stress studies in yeast with a frataxin mutant: a proteomics perspective. J Proteome Res 9(2):730-6 | Large-scale protein detection |
| Klie S, et al. (2010) Biological Cluster Evaluation for Gene Function Prediction. J Comput Biol () | Computational analysis |
| Lee TA, et al. (2010) Dissection of combinatorial control by the met4 transcriptional complex. Mol Biol Cell 21(3):456-69 | Genomic co-immunoprecipitation study , Genomic expression study |
| Li BZ, et al. (2010) Genome-wide transcriptional analysis of Saccharomyces cerevisiae during industrial bioethanol fermentation. J Ind Microbiol Biotechnol 37(1):43-55 | Genomic expression study |
| Li W, et al. (2010) Unraveling Complex Temporal Associations in Cellular Systems across Multiple Time-Series Microarray Datasets. J Biomed Inform () | Computational analysis |
| Ma L, et al. (2010) Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains and low abundance. J Proteome Res () | Other large-scale proteomic analysis |
| Momose Y, et al. (2010) Comparative analysis of transcriptional responses to the cryoprotectants, dimethyl sulfoxide and trehalose, which confer tolerance to freeze-thaw stress in Saccharomyces cerevisiae. Cryobiology () | Genomic expression study |
| Morris RT, et al. (2010) Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae. Bioinformatics 26(2):168-74 | Computational analysis |
| Ozsolak F, et al. (2010) Digital transcriptome profiling from attomole-level RNA samples. Genome Res () | Other genomic analysis |
| Park B and Han K (2010) A reliability measure of protein-protein interactions and a reliability measure-based search engine. Comput Methods Biomech Biomed Engin 13(1):97-104 | Computational analysis |
| Parkkinen JA and Kaski S (2010) Searching for functional gene modules with interaction component models. BMC Syst Biol 4(1):4 | Computational analysis |
| Paulovich AG, et al. (2010) Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance. Mol Cell Proteomics 9(2):242-54 | Large-scale protein detection , Other large-scale proteomic analysis |
| Peleg T, et al. (2010) Network-free inference of knockout effects in yeast. PLoS Comput Biol 6(1):e1000635 | Computational analysis |
| Picotti P, et al. (2010) High-throughput generation of selected reaction-monitoring assays for proteins and proteomes. Nat Methods 7(1):43-6 | Other large-scale proteomic analysis |
| Radivojac P, et al. (2010) Identification, analysis, and prediction of protein ubiquitination sites. Proteins 78(2):365-80 | Computational analysis , Large-scale protein modification |
| Robbins N, et al. (2010) Metabolic control of antifungal drug resistance. Fungal Genet Biol 47(2):81-93 | Large-scale phenotype analysis |
| Rodrigues FA and da Fontoura Costa L (2010) Comparison of the interactomic networks of different species in terms of accessibility. Mol Biosyst 6(1):224-30 | Computational analysis |
| Schietgat L, et al. (2010) Predicting gene function using hierarchical multi-label decision tree ensembles. BMC Bioinformatics 11(1):2 | Computational analysis |
| Shen Y, et al. (2010) Dynamically weighted clustering with noise set. Bioinformatics 26(3):341-7 | Computational analysis |
| Smallbone K, et al. (2010) Towards a genome-scale kinetic model of cellular metabolism. BMC Syst Biol 4(1):6 | Computational analysis |
| Tan M, et al. (2010) Scalable approach for effective control of gene regulatory networks. Artif Intell Med 48(1):51-59 | Computational analysis |
| Titus LC, et al. (2010) Members of the RSC Chromatin-remodeling Complex Are Required for Maintaining Proper Nuclear Envelope Structure and Pore Complex Localization. Mol Biol Cell () | Large-scale phenotype analysis |
| Toombs JA, et al. (2010) Compositional determinants of prion formation in yeast. Mol Cell Biol 30(1):319-32 | Computational analysis |
| Tuller T, et al. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc Natl Acad Sci U S A () | Other genomic analysis |
| Vaillant C, et al. (2010) A novel strategy of transcription regulation by intragenic nucleosome ordering. Genome Res 20(1):59-67 | Other genomic analysis |
| Vellaichamy A, et al. (2010) Size-Sorting Combined with Improved Nanocapillary Liquid Chromatography-Mass Spectrometry for Identification of Intact Proteins up to 80 kDa. Anal Chem () | Large-scale protein detection |
| Venancio TM, et al. (2010) High-confidence mapping of chemical compounds and protein complexes reveals novel aspects of chemical stress response in yeast. Mol Biosyst 6(1):165-71 | Computational analysis |
| Vizeacoumar FJ, et al. (2010) Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. J Cell Biol 188(1):69-81 | Large-scale genetic interaction , Large-scale phenotype analysis |
